Pairwise Alignments

Query, 1148 a.a., transcription-repair coupling factor (mfd) from Enterobacter asburiae PDN3

Subject, 1116 a.a., transcription-repair coupling factor (mfd) from Echinicola vietnamensis KMM 6221, DSM 17526

 Score =  551 bits (1421), Expect = e-161
 Identities = 286/654 (43%), Positives = 420/654 (64%), Gaps = 9/654 (1%)

Query: 433  GFIDTLNNLALICESDLLGERVARRRQDSRRTINPDTLIRNLAELHPGQPIVHLEHGVGR 492
            GF+D    +A   +  +  ER  R +   + +      ++ L  L  G  +VH+++GVGR
Sbjct: 394  GFVDHSTMIACYTDHQIF-ERYHRYKSHKKASKTKALTLKELKTLQAGDYVVHVDYGVGR 452

Query: 493  YQGMTTLEAGGIKGEYLMLTYANDAKLYVPVSSLHLISRYAGGAEENAPLHKLGGDAWAR 552
            + G+  +E      E + L + +D  LYV + SLH IS+Y+G       + KLG   W  
Sbjct: 453  FAGLEKVEVNDNFQEAVRLIFRDDDLLYVNIHSLHKISKYSGQEGTLPTMSKLGSPEWEN 512

Query: 553  ARQKAAEKVRDVAAELLDIYAQRAAKQGFAFKHDKEQYQLFCDSFPFETTPDQAQAINAV 612
             ++K   KV+D+A +L+ +YA+R    G  +  D         SF FE TPDQA A   V
Sbjct: 513  KKKKVKRKVKDIAKDLIALYAKRRNASGHQYAPDSVLQVELESSFIFEDTPDQAVATGDV 572

Query: 613  LSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVENNKQVAVLVPTTLLAQQHFDNFRDR 672
             +DM +P  MDRLVCGDVGFGKTEVA+RAAF A+ + KQVAVLVPTT+LA QH+  F++R
Sbjct: 573  KADMEKPYPMDRLVCGDVGFGKTEVAIRAAFKAINDRKQVAVLVPTTILAMQHYRTFKER 632

Query: 673  FANWPVRIEMLSRFRSTKEQTQILEQASEGKIDILIGTHKLLQSDVKWKDLGLLIVDEEH 732
               +PV+++ ++RFR+TK+  +I +Q + G+IDIL+GTH+++  DV++KDLGLLI+DEE 
Sbjct: 633  LEGFPVKVDYINRFRTTKQVKEITKQVTSGEIDILVGTHRIVNKDVQFKDLGLLIIDEEQ 692

Query: 733  RFGVRHKERIKAMRADVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVRE 792
            +FGV+ K+++K +R +VD+LTLTATPIPRTL+ ++ G RDLS+IATPP  R  V T +  
Sbjct: 693  KFGVKVKDQLKELRVNVDVLTLTATPIPRTLHFSLMGARDLSVIATPPPNRQPVTTEIHT 752

Query: 793  YDNLVVREAILREVLRGGQVYYLYNDVENIQKAADRLAELVPEARIAIGHGQMRERELER 852
            ++  V+R+A+ RE+ RGGQV++++N V  I   A+ +  LVP+A+IA  HGQM  ++LE+
Sbjct: 753  FEEEVIRDAVSRELQRGGQVFFVHNRVGEIDSIANLIMRLVPDAKIAGAHGQMDGKQLEK 812

Query: 853  VMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYA 912
            +M  F    F+VLV T IIE+G+DIP ANTIII RA  FGL+ LHQ+RGRVGRS+ +AY 
Sbjct: 813  IMVKFIEGEFDVLVSTNIIESGLDIPNANTIIINRAHMFGLSDLHQMRGRVGRSNKKAYC 872

Query: 913  WLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELLGEDQSGSMETIGF 972
            +LLT     +T +A+KRL+ +    DLG GF +A  DL+IRGAG LLG +QSG +  +GF
Sbjct: 873  YLLTSPMSGLTAEARKRLQTLEEFSDLGDGFKVAMRDLDIRGAGNLLGAEQSGFITDLGF 932

Query: 973  SLYMELLENAVDALKAGREPSLED--------LTSQQTEVELRMPSLLPDDFIPDVNTRL 1024
             +Y ++L+ AV  LK     SL +        +  Q   +E  M  L+P+D++ +++ RL
Sbjct: 933  EMYHKILDEAVQELKENEFASLFEVDLKEKVKVLVQDCVIETDMELLIPEDYVSNISERL 992

Query: 1025 SFYKRIASAKKENELEEIKVELIDRFGLLPDPARNLLDIARLRQQAQKLGIRKL 1078
            + Y ++ + K E  L +    + DRFG +P    +L++  RLR  A+ LG  KL
Sbjct: 993  NLYSKLDNIKTEEALTKFAHAVSDRFGPIPPVVEDLMETVRLRWLAEGLGFEKL 1046



 Score = 65.5 bits (158), Expect = 2e-14
 Identities = 37/195 (18%), Positives = 89/195 (45%), Gaps = 3/195 (1%)

Query: 22  LTGAACATLVAEIAERHPGPVILVAPDMQNALRLHDEIRQFTDSL---VFSLADWETLPY 78
           ++G+    L+A          +++A D + A  L  ++    D +   +F  +      +
Sbjct: 36  ISGSMDMVLLATFINLRHSSHLIIAHDKEEAAYLASDLSSLLDRVTPHIFPSSYKRPYQH 95

Query: 79  DSFSPHQEIISSRLSTLYQLPTMQRGVLIVPVNTLMQRVCPHSYLHGHALVMKKGQRLSR 138
           +       ++ + +         +  +++     L ++V     L  +    K G+++  
Sbjct: 96  EEVDNANVLMRAEILNKVLSSDTKMEIIVSYPEALYEKVINKKSLQENTFTAKVGEKVDV 155

Query: 139 DALRAQLDGAGYRHVDQVMEHGEYATRGALLDLYPMGSDQPYRLDFFDDEIDSLRVFDAD 198
           + +   L    +   D V E G++A RG ++D++   ++ PYR++ F  EI+S+R FD +
Sbjct: 156 EFITELLSTYDFEKTDFVYEPGQFAIRGGIIDVFSFANEYPYRIELFGKEIESIRTFDTE 215

Query: 199 TQRTLEEVESINLLP 213
           +Q + E ++ I+++P
Sbjct: 216 SQLSEESLDHISIIP 230