Pairwise Alignments

Query, 1148 a.a., transcription-repair coupling factor (mfd) from Enterobacter asburiae PDN3

Subject, 1149 a.a., transcription-repair coupling factor from Brevundimonas sp. GW460-12-10-14-LB2

 Score =  747 bits (1929), Expect = 0.0
 Identities = 440/1144 (38%), Positives = 655/1144 (57%), Gaps = 58/1144 (5%)

Query: 28   ATLVAEIAERHPGPVILVAPDMQNALRLHDEIRQFTDSL-VFSLADWETLPYDSFSPHQE 86
            A +VAE  +   G  + VA D Q +       + F+  + V     W+ LPYD  SP   
Sbjct: 22   ALIVAERIKAGGGVGLFVARDFQRSGSFVQAFQFFSKDIEVLDYPAWDCLPYDRLSPTAG 81

Query: 87   IISSRLSTLYQLPTMQRG----VLIVPVNTLMQRVCPHSYLHGHALVMKKGQRLSRDALR 142
            I + R++TL +L   + G    +++  V+  MQR  P S         K G+ L   AL 
Sbjct: 82   IAAQRMATLTRLAMRKPGDAPVLVVTTVSAAMQRTPPKSVTTQAGFETKVGRDLDIQALE 141

Query: 143  AQLDGAGYRHVDQVMEHGEYATRGALLDLYPMGSDQPYRLDFFDDEIDSLRVFDADTQRT 202
                  GY     V E GE+A RG ++D+YP G ++P RLD F  E++S+R FD +TQR+
Sbjct: 142  RYFAANGYVRASTVSERGEFAVRGGVVDVYPPGFEEPVRLDMFGSELESIRTFDPETQRS 201

Query: 203  LEEVESINLLPAHEFPTDKTAIELFRSQWRDKFEVKRDAEHIYQQVSKGTLPAGIEYWQP 262
              ++  ++L P  E   D  AI  FR+ + + F    D + +Y  +S+G    G+E W P
Sbjct: 202  TGQMTFVSLAPVSEALLDAAAISRFRTGYLNLFGAPGD-DPLYATISEGARRQGMEQWLP 260

Query: 263  LFFNEPLPALFSYFPANTLIVNTGDIDAS--------ASRFESETRARFENRGVDPMRPL 314
            LF+ E L +LF Y P +  I     ++ +        A  +++   A  + +G       
Sbjct: 261  LFY-ETLDSLFDYLPDDAAIFLDNQVETARAERWDLVADAYDARAEAA-KAKGQASANRA 318

Query: 315  LPPEALWLRTDELNAEL-----KRWPRMQLKTDSLADKAANTNLAFRTLPDL----AVQA 365
            LPP+ L+L   + N  L     +R+       +    +   T  A R    +    AV A
Sbjct: 319  LPPKRLYLDAGDWNQALAGRVVRRFTPFSTGGEDAGGRLGRTFAAERAQDSVNLFEAVAA 378

Query: 366  QQKSPLDNLRKFLESFTGPVVFSVESEGRREALGELL---GRIKVAPKRILRLSEATGNG 422
               +        L++    V+F+  +EG  E L  +L   G   +   R     +A    
Sbjct: 379  HAAA--------LKADGKRVLFASWTEGSSERLATMLADHGLDHIVAVRDWADVQAAPKD 430

Query: 423  RYLM-IGAAEHGFIDTLNNLALICESDLLGERVARRRQDSRRTINPDTLIRNLAELHPGQ 481
             YL  +   EHGF+   + +A+I E+D+LG+R+AR R+  R +      +   + L  G 
Sbjct: 431  LYLRGVLPVEHGFVT--DAVAVISETDILGDRLARPRKKRRAS----NFLAEASALTTGD 484

Query: 482  PIVHLEHGVGRYQGMTTLEAGGIKGEYLMLTYANDAKLYVPVSSLHLISRYAGGAEENAP 541
             +VHL+HG+GRY+G+ TLE      + L L YA ++KLY+PV ++ L++RY G   E   
Sbjct: 485  LVVHLDHGIGRYEGLKTLEIQQAPHDCLELFYAGESKLYLPVENIDLLTRY-GSDSEGVQ 543

Query: 542  LHKLGGDAWARARQKAAEKVRDVAAELLDIYAQRAAKQGFAFKHDKEQYQLFCDSFPFET 601
            L KLGG  W   + KA E++R +A  L+ + A+RA ++  A       +  FC  FP+E 
Sbjct: 544  LDKLGGAGWQARKAKAKERLRAMAEGLIALAAKRALRETDAVTPPPGLFAEFCARFPYEE 603

Query: 602  TPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVENNKQVAVLVPTTLL 661
            T DQ  AI  VL D+ +   MDRL+CGDVGFGKTEVA+RAAF+     +QVA++ PTTLL
Sbjct: 604  TDDQLNAIGDVLEDLGKGTPMDRLICGDVGFGKTEVALRAAFVVAMTGQQVAIVAPTTLL 663

Query: 662  AQQHFDNFRDRFANWPVRIEMLSRFRSTKEQTQILEQASEGKIDILIGTHKLLQSDVKWK 721
            A+QH+  F +RFA WPV++  LSR   +KE T+      +G ++I++GTH +L   V ++
Sbjct: 664  ARQHYKTFTERFAGWPVKVRQLSRMVGSKEATETRAGLKDGSVEIVVGTHAVLSEQVGFR 723

Query: 722  DLGLLIVDEEHRFGVRHKERIKAMRADVDILTLTATPIPRTLNMAMSGMRDLSIIATPPA 781
            DLGL+IVDEE  FGV+HKE++K +RADV +LTLTATPIPRTL MA+SG+R++SIIATPP 
Sbjct: 724  DLGLVIVDEEQHFGVKHKEKLKTLRADVHLLTLTATPIPRTLQMALSGIREMSIIATPPV 783

Query: 782  RRLAVKTFVREYDNLVVREAILREVLRGGQVYYLYNDVENIQKAADRLAELVPEARIAIG 841
             RLAV+T+V  +D ++VREA+LRE  RGGQ YY+   ++++      L E VPE +  +G
Sbjct: 784  DRLAVRTYVTPWDPVLVREALLREKYRGGQAYYVAPRLKDLPAIEKFLREQVPEVKFVVG 843

Query: 842  HGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRG 901
            HGQM   +LE VM+ F+   ++VLV TTI+E+G+DIPTANT+I+ RAD FGLAQL+Q+RG
Sbjct: 844  HGQMSATQLEEVMSAFYDGEYDVLVSTTIVESGLDIPTANTLIVHRADMFGLAQLYQIRG 903

Query: 902  RVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELLGE 961
            RVGRS  +A+A+L T   K MT  A++RL+ + SL++LGAGF LA+HDL+ RG G LLG+
Sbjct: 904  RVGRSKARAFAYLTTDAVKPMTLSAERRLQVLQSLDNLGAGFQLASHDLDQRGGGNLLGD 963

Query: 962  DQSGSMETIGFSLYMELLENAVDALKAGREPSLEDLTSQQTEVELRMPSLLPDDFIPDVN 1021
            +QSG +  +G  LY ++LE+AV  L+   E    D       + +    L+P+D++PD+N
Sbjct: 964  EQSGHIREVGVELYQQMLEDAVAELREKGEGQAVD-RGWSPSINVGASVLIPEDYVPDLN 1022

Query: 1022 TRLSFYKRIASAKKENELEEIKVELIDRFGLLPDPARNLLDIARLRQQAQKLGIRKLEGN 1081
             RLS Y+R++ A++  + E +  ELIDRFG LPD A+ LL I  ++   +K  I K++  
Sbjct: 1023 VRLSLYRRLSDAEQAEDREALAAELIDRFGPLPDEAQQLLKIVGIKSNCRKACIEKIDIG 1082

Query: 1082 EKGGVIEFAEKNHVNPMWLIGLLQKQPQHFRL----------DGPT---RLKFTQELTER 1128
             +G V+   + +  NP  L+GL+QK    +++          D PT   RLK  + +T  
Sbjct: 1083 PRGAVLTLRDNSFPNPAGLVGLIQKNHAFWKIRPDQKIVVSGDWPTAEERLKVAERITAD 1142

Query: 1129 KTRM 1132
              R+
Sbjct: 1143 LARV 1146