Pairwise Alignments

Query, 1148 a.a., transcription-repair coupling factor (mfd) from Enterobacter asburiae PDN3

Subject, 1148 a.a., transcription-repair coupling factor from Escherichia coli BL21

 Score = 2106 bits (5457), Expect = 0.0
 Identities = 1048/1148 (91%), Positives = 1101/1148 (95%)

Query: 1    MPEHYRYSLPVKAGDQRQLGELTGAACATLVAEIAERHPGPVILVAPDMQNALRLHDEIR 60
            MPE YRY+LPVKAG+QR LGELTGAACATLVAEIAERH GPV+L+APDMQNALRLHDEI 
Sbjct: 1    MPEQYRYTLPVKAGEQRLLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEIS 60

Query: 61   QFTDSLVFSLADWETLPYDSFSPHQEIISSRLSTLYQLPTMQRGVLIVPVNTLMQRVCPH 120
            QFTD +V +LADWETLPYDSFSPHQ+IISSRLSTLYQLPTMQRGVLIVPVNTLMQRVCPH
Sbjct: 61   QFTDQMVMNLADWETLPYDSFSPHQDIISSRLSTLYQLPTMQRGVLIVPVNTLMQRVCPH 120

Query: 121  SYLHGHALVMKKGQRLSRDALRAQLDGAGYRHVDQVMEHGEYATRGALLDLYPMGSDQPY 180
            S+LHGHALVMKKGQRLSRDALR QLD AGYRHVDQVMEHGEYATRGALLDL+PMGS+ PY
Sbjct: 121  SFLHGHALVMKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSELPY 180

Query: 181  RLDFFDDEIDSLRVFDADTQRTLEEVESINLLPAHEFPTDKTAIELFRSQWRDKFEVKRD 240
            RLDFFDDEIDSLRVFD D+QRTLEEVE+INLLPAHEFPTDK AIELFRSQWRD FEVKRD
Sbjct: 181  RLDFFDDEIDSLRVFDVDSQRTLEEVEAINLLPAHEFPTDKAAIELFRSQWRDTFEVKRD 240

Query: 241  AEHIYQQVSKGTLPAGIEYWQPLFFNEPLPALFSYFPANTLIVNTGDIDASASRFESETR 300
             EHIYQQVSKGTLPAGIEYWQPLFF+EPLP LFSYFPANTL+VNTGD++ SA RF+++T 
Sbjct: 241  PEHIYQQVSKGTLPAGIEYWQPLFFSEPLPPLFSYFPANTLLVNTGDLENSAERFQADTL 300

Query: 301  ARFENRGVDPMRPLLPPEALWLRTDELNAELKRWPRMQLKTDSLADKAANTNLAFRTLPD 360
            ARFENRGVDPMRPLLPP++LWLR DEL +ELK WPR+QLKT+ L  KAAN NL F  LPD
Sbjct: 301  ARFENRGVDPMRPLLPPQSLWLRVDELFSELKNWPRVQLKTEHLPTKAANANLGFEKLPD 360

Query: 361  LAVQAQQKSPLDNLRKFLESFTGPVVFSVESEGRREALGELLGRIKVAPKRILRLSEATG 420
            LAVQAQQK+PLD LRKFLESF GPVVFSVESEGRREALGELL RIK+AP+RI+RL EA+ 
Sbjct: 361  LAVQAQQKAPLDALRKFLESFDGPVVFSVESEGRREALGELLARIKIAPQRIMRLDEASD 420

Query: 421  NGRYLMIGAAEHGFIDTLNNLALICESDLLGERVARRRQDSRRTINPDTLIRNLAELHPG 480
             GRYLMIGAAEHGF+D + NLALICESDLLGERVARRRQDSRRTINPDTLIRNLAELH G
Sbjct: 421  RGRYLMIGAAEHGFVDKVRNLALICESDLLGERVARRRQDSRRTINPDTLIRNLAELHIG 480

Query: 481  QPIVHLEHGVGRYQGMTTLEAGGIKGEYLMLTYANDAKLYVPVSSLHLISRYAGGAEENA 540
            QP+VHLEHGVGRY GMTTLEAGGI GEYLMLTYANDAKLYVPVSSLHLISRYAGGAEENA
Sbjct: 481  QPVVHLEHGVGRYAGMTTLEAGGITGEYLMLTYANDAKLYVPVSSLHLISRYAGGAEENA 540

Query: 541  PLHKLGGDAWARARQKAAEKVRDVAAELLDIYAQRAAKQGFAFKHDKEQYQLFCDSFPFE 600
            PLHKLGGDAW+RARQKAAEKVRDVAAELLDIYAQRAAK+GFAFKHD+EQYQLFCDSFPFE
Sbjct: 541  PLHKLGGDAWSRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDREQYQLFCDSFPFE 600

Query: 601  TTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVENNKQVAVLVPTTL 660
            TTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAV+N+KQVAVLVPTTL
Sbjct: 601  TTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTL 660

Query: 661  LAQQHFDNFRDRFANWPVRIEMLSRFRSTKEQTQILEQASEGKIDILIGTHKLLQSDVKW 720
            LAQQH+DNFRDRFANWPVRIEM+SRFRS KEQTQIL + +EGKIDILIGTHKLLQSDVK+
Sbjct: 661  LAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKF 720

Query: 721  KDLGLLIVDEEHRFGVRHKERIKAMRADVDILTLTATPIPRTLNMAMSGMRDLSIIATPP 780
            KDLGLLIVDEEHRFGVRHKERIKAMRA+VDILTLTATPIPRTLNMAMSGMRDLSIIATPP
Sbjct: 721  KDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPP 780

Query: 781  ARRLAVKTFVREYDNLVVREAILREVLRGGQVYYLYNDVENIQKAADRLAELVPEARIAI 840
            ARRLAVKTFVREYD+LVVREAILRE+LRGGQVYYLYNDVENIQKAA+RLAELVPEARIAI
Sbjct: 781  ARRLAVKTFVREYDSLVVREAILREILRGGQVYYLYNDVENIQKAAERLAELVPEARIAI 840

Query: 841  GHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLR 900
            GHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLR
Sbjct: 841  GHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLR 900

Query: 901  GRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELLG 960
            GRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELLG
Sbjct: 901  GRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELLG 960

Query: 961  EDQSGSMETIGFSLYMELLENAVDALKAGREPSLEDLTSQQTEVELRMPSLLPDDFIPDV 1020
            E+QSGSMETIGFSLYMELLENAVDALKAGREPSLEDLTS QTEVELRMPSLLPDDFIPDV
Sbjct: 961  EEQSGSMETIGFSLYMELLENAVDALKAGREPSLEDLTSHQTEVELRMPSLLPDDFIPDV 1020

Query: 1021 NTRLSFYKRIASAKKENELEEIKVELIDRFGLLPDPARNLLDIARLRQQAQKLGIRKLEG 1080
            NTRLSFYKRIASAK ENELEEIKVELIDRFGLLPDPAR LLDIARLRQQAQKLGIRKLEG
Sbjct: 1021 NTRLSFYKRIASAKTENELEEIKVELIDRFGLLPDPARTLLDIARLRQQAQKLGIRKLEG 1080

Query: 1081 NEKGGVIEFAEKNHVNPMWLIGLLQKQPQHFRLDGPTRLKFTQELTERKTRMDWVRNFMR 1140
            NEKGGVIEFAEKNHVNP WLIGLLQKQPQH+RLDGPTRLKF Q+L+ERKTR++WVR FMR
Sbjct: 1081 NEKGGVIEFAEKNHVNPAWLIGLLQKQPQHYRLDGPTRLKFIQDLSERKTRIEWVRQFMR 1140

Query: 1141 QLEENAIA 1148
            +LEENAIA
Sbjct: 1141 ELEENAIA 1148