Pairwise Alignments

Query, 385 a.a., ABC-type branched-chain amino acid transport systems, periplasmic component from Enterobacter asburiae PDN3

Subject, 375 a.a., High-affinity leucine-specific transport system, periplasmic binding protein LivK (TC 3.A.1.4.1) from Pseudomonas fluorescens GW456-L13

 Score =  199 bits (506), Expect = 1e-55
 Identities = 126/373 (33%), Positives = 204/373 (54%), Gaps = 13/373 (3%)

Query: 3   TVKISALSAAILLGSFASTAAWAADGETVVIGLAGPLTGPSARIGKDLENGAQLAIDDIN 62
           T +IS L AA++L   AS + +AAD  T+ IG+AGP TGP A+ G    +GA++AI+ IN
Sbjct: 5   TKQISKLFAAMVLAGVASHS-FAAD--TIKIGIAGPKTGPVAQYGDMQFSGAKMAIEQIN 61

Query: 63  KQHPTIGGKAVTFKLQSEDDQSDPRTAVAVAQRLVDSGVAGVVGHWNTGTSIPAARIYHD 122
            +    G K    +    DD  DP+ AVAVA ++V+ GV  VVGH  + ++ PA+ IY D
Sbjct: 62  AKGGVDGKKLEAVEY---DDACDPKQAVAVANKVVNDGVKFVVGHLCSSSTQPASDIYED 118

Query: 123 AGIAQVAPVATGHAYTKQGFDTSFRVMGHDDDGGQLAGQYAVNTLKAKRIAVIDDRTAFG 182
            G+  + P AT    T +G+   FR +G D   G  AG Y  + +K K +AV+ D+  +G
Sbjct: 119 EGVIMITPAATSPDITARGYKMVFRTIGLDSAQGPAAGNYIADFVKPKIVAVLHDKQQYG 178

Query: 183 QGLADQFIKSLEAQGVKVVDRQYVDDKTVDFSAVLTAIRSKNADLIFFGGVDSQAAPLAR 242
           +G+A    K+LE +GVKV   + V+    DFS+++  ++  N D +++GG   +   + R
Sbjct: 179 EGIASAVKKTLEGKGVKVAVFEGVNAGDKDFSSMIAKLKQANVDFVYYGGYHPELGLILR 238

Query: 243 RIKQLGMNATLMGAGGFVSQTFLQLAQKEGEGVVALEPGLPVEQMPGGKAFEQAYQSRYH 302
           +  + G+ A  MG  G  + +  Q+A+   EG++   P    +Q P   A   A++++  
Sbjct: 239 QSAEKGLKAKFMGPEGVGNDSISQIAKDASEGLLVTLP-KSFDQDPANVALADAFKAKKE 297

Query: 303 THIELHAPF---AYDATRVLVAAMEKADSVEPSDYLPALRAISYSGVTGQIAFDKEGNLK 359
              +   PF   AY A  V+   ++ A S + +    A+ A ++   TG ++FD++G+LK
Sbjct: 298 ---DPSGPFVFPAYSAVTVIADGIKAAKSEDSAKVAEAIHAGTFKTPTGDLSFDEKGDLK 354

Query: 360 SPSFTVYKVVDGK 372
              F VY+   GK
Sbjct: 355 DFKFVVYEWHFGK 367