Pairwise Alignments

Query, 511 a.a., PAS domain S-box from Enterobacter asburiae PDN3

Subject, 521 a.a., aerotaxis receptor, putative from Pseudomonas fluorescens GW456-L13

 Score =  241 bits (616), Expect = 4e-68
 Identities = 163/513 (31%), Positives = 277/513 (53%), Gaps = 50/513 (9%)

Query: 1   MRRNSPVTQNEYLLNDGSTLMSTTDTKSHITYANSAFIEASGYKEEHLLGEPHNLIRHPD 60
           MR N PVT++E +      L+STTD  S ITY N AF+  SG+  + L+G+ HNL+RHPD
Sbjct: 1   MRVNLPVTEHERVFPTEQRLISTTDLDSRITYCNEAFVAISGFTYDELVGQTHNLVRHPD 60

Query: 61  MPAEAFGDMWFTLQQGETWTGLVKNRRHNGDHYWVRANVTPVWQGGSLTGYISVRNIPAR 120
           MP   F  MW T++QG+ W G+VKNR  NGD YWV A VTP+++ G ++GY SVR++P+R
Sbjct: 61  MPPGVFVHMWHTIKQGKPWMGIVKNRSKNGDFYWVSAYVTPIYENGRMSGYESVRSVPSR 120

Query: 121 EEIAASEKLYAKVRNNE---LKHYRFYKGLLVRRGLFSFMSLFKCLSTSKRIHLGIATTA 177
           +++  +  LY+++R  +    +  R ++ L  R+G    M+    +  S+ +    A   
Sbjct: 121 DQVRRASALYSRMRAGKPIIARSARIFRPL--RQGWPLLMAGGVSMLGSQWLSTTAAQGV 178

Query: 178 LLSCLAVYLFPDKLVQSGSLVLLFTSLAYYLHAQIARPVKSIVQQMQSVVSGRKTDYYHF 237
           L++ L V  +   L++S +   +  +LA +  A  + P+ ++         G+       
Sbjct: 179 LIASLGVAWY---LIESRNRKAIERTLAEHPKA-FSDPLVALTYSDNYGPQGQ------- 227

Query: 238 DRIDDIGLMMRLVNQSG---LNLNSLVD---DVGAQISGIGTISQQVAKEGAALQTRSEE 291
                  L M +V++       L+ LVD   +V A+ +    +S   A+     ++ +++
Sbjct: 228 -------LDMAMVSEEARLQTALSRLVDAGVNVKAKAAQSSELSGSQAQSLDRQRSETDQ 280

Query: 292 TADFLQQTASAVEEIASAVKQTAETAKEATEMADRTRDSAHRGEAMMK------ETIGM- 344
           +A  + Q A+ ++E+   V  TA  A EA ++     + A +  + MK        IG  
Sbjct: 281 SAAAISQMAATIQEVTQNVISTAHAASEADQLTRDGSELARQSLSAMKTMHEAVNEIGQA 340

Query: 345 MQSVSQDNSQIVDIISVIDRIAFQTNILALNAAVEAARAGEAGRGFAVVAAEVRNLAQHS 404
           + +++ +   I  ++ VI  IA QTN+LALNAA+EAARAGE GRGFAVVA EVR+LAQ +
Sbjct: 341 VDALASETQSIGSVVDVITSIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRSLAQRT 400

Query: 405 ATAAKEIKALI-------EKNVASVNAG-------VEKVEQTETQLTVMIDNVLRVSSLI 450
            T+ ++I  +I       ++ V++ N G       ++ VE  ++ L  +   V R++ + 
Sbjct: 401 RTSTEQIHGIIASLYAGADRAVSTANRGEQISRESMQSVEAVQSALVGISQAVTRITGMS 460

Query: 451 KEIGHATQEQTQALTLINASISRIGAMTHNNTG 483
           +++  A++EQ+     IN  I+RI  +  ++ G
Sbjct: 461 QQMASASEEQSHVAEDINQQITRIAQLCDHSAG 493



 Score = 26.6 bits (57), Expect = 0.002
 Identities = 24/93 (25%), Positives = 41/93 (44%), Gaps = 9/93 (9%)

Query: 211 QIARPVKSIVQQMQSVVSGRKTDYYHFDRIDDIGLMMRLVNQSGLNLNSLVDDVGAQISG 270
           QI+R     V+ +QS + G          +  I  M + +  +    + + +D+  QI+ 
Sbjct: 430 QISRESMQSVEAVQSALVGIS------QAVTRITGMSQQMASASEEQSHVAEDINQQITR 483

Query: 271 IGTI---SQQVAKEGAALQTRSEETADFLQQTA 300
           I  +   S   AK+GAA+    E  AD+L   A
Sbjct: 484 IAQLCDHSAGQAKQGAAISQDLEVMADYLHSLA 516