Pairwise Alignments

Query, 511 a.a., PAS domain S-box from Enterobacter asburiae PDN3

Subject, 521 a.a., PAS from Pseudomonas syringae pv. syringae B728a ΔmexB

 Score =  237 bits (605), Expect = 7e-67
 Identities = 171/501 (34%), Positives = 243/501 (48%), Gaps = 38/501 (7%)

Query: 1   MRRNSPVTQNEYLLNDGSTLMSTTDTKSHITYANSAFIEASGYKEEHLLGEPHNLIRHPD 60
           MR N P+TQ+E        L+STTDT+  ITY N AF++ SGY E  LLG  HN +RHPD
Sbjct: 1   MRNNQPITQHERTFPAEQRLISTTDTRGTITYCNDAFVDISGYSEAELLGAAHNTVRHPD 60

Query: 61  MPAEAFGDMWFTLQQGETWTGLVKNRRHNGDHYWVRANVTPVWQGGSLTGYISVRNIPAR 120
           +P   F  MW TL+ G+ W G+VKNR  NGDHYWV A VTPV +   + G+ SVR  P  
Sbjct: 61  VPPAVFEHMWTTLKSGQPWMGIVKNRCKNGDHYWVNAYVTPVLENRQVVGFESVRIKPTA 120

Query: 121 EEIAASEKLYAKVRNNELKHYRFYKGLLVRRGLFSFM---SLFKCLSTSKRIHLGIATTA 177
           E++  +E LY ++   +       K L V +    F+    L   +      H G A  A
Sbjct: 121 EQVRRAEALYTRLNKGKSAVPGRDKWLPVLQDWLPFILVSQLSFLIGVWLNSHWGFALAA 180

Query: 178 LLSCLAVYLFPDKLVQSGSLVLLFTS-------LAYYLHAQIARPVKSIVQQMQSVVSGR 230
            LS + + L      Q G+  LL  +       L   ++     P   +   + S  +  
Sbjct: 181 ALS-VPLGLLGLSWQQRGTKRLLRLAEQTTSDPLIAQMYTDSRGPQARLEMSILSQEARM 239

Query: 231 KTDYYHFDRIDDIGLMMRLVNQSGLNLNSLVDDVGAQISGIGTISQQVAKEGAALQTRSE 290
           KT      R+ D       +N      NSL     A  S IG   Q+V  E  A      
Sbjct: 240 KT---CLTRLQDTA---EHLNSQARQSNSL-----ANASSIGLERQRVETEQVA--AAIN 286

Query: 291 ETADFLQQTASAVEEIASAVKQTAETAKEATEMADRTRDSAHRGEAMMKETIGMMQSVSQ 350
           + A   Q+ AS V   A A +Q  E  +   ++A  TR++  R    + ET   +  +++
Sbjct: 287 QMAATTQEVASHVNRAADATQQANELTRRGRDIAGETREAIQRLSTSVGETGLTVTRLAK 346

Query: 351 DNSQIVDIISVIDRIAFQTNILALNAAVEAARAGEAGRGFAVVAAEVRNLAQHSATAAKE 410
           D+ +I  ++ VI  IA QTN+LALNAA+EAARAGE GRGFAVVA EVR LAQ +A +  +
Sbjct: 347 DSDEIGGVVDVIKGIADQTNLLALNAAIEAARAGEMGRGFAVVADEVRQLAQRTAESTGQ 406

Query: 411 IKALIEK--------------NVASVNAGVEKVEQTETQLTVMIDNVLRVSSLIKEIGHA 456
           I  LI K                     GV +V + +  L  + + V  ++ +  +I  A
Sbjct: 407 IHGLIAKLQQTATDAVHTMDTGRRQAEEGVARVLEADQALVGISEAVANITDMTTQIATA 466

Query: 457 TQEQTQALTLINASISRIGAM 477
           T+EQ+     IN +I+ I ++
Sbjct: 467 TEEQSAVAEEINRNIATIASL 487



 Score = 24.6 bits (52), Expect = 0.009
 Identities = 13/63 (20%), Positives = 28/63 (44%)

Query: 270 GIGTISQQVAKEGAALQTRSEETADFLQQTASAVEEIASAVKQTAETAKEATEMADRTRD 329
           GI      +      + T +EE +   ++    +  IAS   QT++ A+ +  ++    D
Sbjct: 448 GISEAVANITDMTTQIATATEEQSAVAEEINRNIATIASLADQTSDEARRSAVLSGELTD 507

Query: 330 SAH 332
           +A+
Sbjct: 508 TAN 510