Pairwise Alignments

Query, 380 a.a., Outer membrane protein (porin) from Enterobacter asburiae PDN3

Subject, 362 a.a., Outer membrane porin protein NmpC precursor from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

 Score =  438 bits (1126), Expect = e-127
 Identities = 229/386 (59%), Positives = 276/386 (71%), Gaps = 30/386 (7%)

Query: 1   MKRKVLAIVVPALLMAGAANAAEMYNKNGNKVDLYGKVDARHTFSDNPGDDGDETYVQVG 60
           MK K++A+ V +LL AG  NAAE+YNK+GNK+DLYGKV A+H FSD+ G DGD+TY ++G
Sbjct: 1   MKLKLVAVAVTSLLAAGVVNAAEVYNKDGNKLDLYGKVHAQHYFSDDNGSDGDKTYARLG 60

Query: 61  FKGETRIANDLIGYGQWEYKTFANNTEGAG-DKSFNRLAYAGLKYGEYGSFDYGRNYGVV 119
           FKGET+I + L G+GQWEY+   N TE  G DK   RLA+AGLK+ +YGSFDYGRNYGV 
Sbjct: 61  FKGETQINDQLTGFGQWEYEFKGNRTESQGADKDKTRLAFAGLKFADYGSFDYGRNYGVA 120

Query: 120 YDVEAWTDMLPVFGGDSYTWTDNFMNGRANGLATYRNQDFFGLVEGLNFALQYQGANEGQ 179
           YD+ AWTD+LP FGGD++T TD FM GR  G+ATYRN DFFGLVEGLNFA QYQG N+  
Sbjct: 121 YDIGAWTDVLPEFGGDTWTQTDVFMTGRTTGVATYRNTDFFGLVEGLNFAAQYQGKNDRD 180

Query: 180 DATEDQEGTKNGHDDVRFQNGDGFGMSTSYDFAGDLSGLSLGAAYSSSDRTNEQVAYGKA 239
            A E               NGDGFG+S +Y++     G  +GAAY+ SDRTN QV   KA
Sbjct: 181 GAYE--------------SNGDGFGLSATYEY----EGFGVGAAYAKSDRTNNQV---KA 219

Query: 240 AEGIGYAGGDKAEAWTVGAKYDANNVYLAMMYAETRNMTPI-----GNVGIANQTQNFEA 294
           A  +  A G  AE W  G KYDANN+YLA  Y+ET NMT       G+  IAN+TQNFEA
Sbjct: 220 ASNLN-AAGKNAEVWAAGLKYDANNIYLATTYSETLNMTTFGEDAAGDAFIANKTQNFEA 278

Query: 295 VAQYQFDFGLRPSLAWVYSKGKDLDGKGFNQDLVNYIDLGMTYSFNKNFSTYVDYKINML 354
           VAQYQFDFGLRPS+A++ SKGK+L   G +QDLV YID+G TY FNKN ST+VDYKIN+L
Sbjct: 279 VAQYQFDFGLRPSIAYLKSKGKNLGTYG-DQDLVEYIDVGATYYFNKNMSTFVDYKINLL 337

Query: 355 DNDEALYDAYGISTDDIVGVGMTYQF 380
           D D     A  +STD+IV VG+ YQF
Sbjct: 338 D-DSDFTKAAKVSTDNIVAVGLNYQF 362