Pairwise Alignments

Query, 400 a.a., RND family efflux transporter, MFP subunit from Enterobacter asburiae PDN3

Subject, 418 a.a., RND efflux system, membrane fusion protein from Variovorax sp. SCN45

 Score =  207 bits (526), Expect = 6e-58
 Identities = 133/386 (34%), Positives = 209/386 (54%), Gaps = 13/386 (3%)

Query: 6   KSRWAIA-AGIIVVVLAAAWYWHSQSANSAAPAGASSQAQRPAGGGRHGMRGGALAPVQA 64
           K   A+A AG+++V +A  W+      + +A   A+  A+ P  GG      GA A V  
Sbjct: 2   KKNVAVALAGVLIVAVAGGWW------SMSADKPAAKTAKAPGAGGGAPGASGAPALVTL 55

Query: 65  ATAVNKAVPRYLTGLGTITAANTVTVRSRVDGQLMAIHFQEGQQVKAGDLLAEIDPSQFK 124
           ATA  + VP  +   G++ + N+V +R +V   + A+H +EGQ VKAG LL  +D    +
Sbjct: 56  ATAQKQDVPVTVQVNGSVVSLNSVDLRPQVTNTVSAVHVKEGQFVKAGQLLFTLDDRNDQ 115

Query: 125 VALAQAQGQLAKDKATLANARRDLVRYQQLVKTNLVSRQELDTQQSLVSETQGTIKADEA 184
             LA+A+ Q  KD+ATLA+  R   R Q LV  N +++   D   S +   +  + AD A
Sbjct: 116 ANLARAKAQQQKDEATLADLERQYKRSQDLVAQNFIAKSAADATLSQLEAQRAAVAADRA 175

Query: 185 AVASAQLQLDWSRITAPIDGRVGLKQVDIGNQISSGDTTGIVVITQTHPIDLVFTLPESD 244
           AV SAQ+ L ++ + API GR+G   +  G  +    T  +V +TQ  PI + F +PE +
Sbjct: 176 AVQSAQVALGYATLRAPIAGRIGAVNIYPGTLVQ--PTLSLVTVTQLDPIAVSFPVPEGN 233

Query: 245 IATVVQAQKAGKGLVVEAWDRSNKQKLSEGSLLSLDNQIDTTTGTIKLKARFNNQDDALF 304
           +  +++A ++     VEA     K+ L+ G+L  +DN +D   GT++ KA F N D  L+
Sbjct: 234 LQDLLEASRSRS--KVEAVVTGRKEPLA-GTLDFVDNTVDPQIGTVRAKAVFANADQGLW 290

Query: 305 PNQFVNARMLVATEENAVVIPTAALQMGNEGNFVWVLNDDNKVSKHLVKTGIQDSQTVVI 364
           P QFV  R+ V T E A V+P AAL M ++G  ++V+++    ++  VK  +    T V 
Sbjct: 291 PGQFVGTRITVRTLEGATVVPAAALMMLSDGPSLYVVDEGKTATRRKVK-ALHTFGTKVA 349

Query: 365 AAGLSAGERVVTDGIDRLTEGAKVEV 390
            +G+  GE+VV +G   +  G KV V
Sbjct: 350 VSGVEPGEQVVIEGSQNVRPGGKVRV 375