Pairwise Alignments

Query, 332 a.a., ABC-type sugar transport system, periplasmic component from Enterobacter asburiae PDN3

Subject, 295 a.a., ribose ABC transporter substrate-binding protein RbsB from Pectobacterium carotovorum WPP14

 Score = 89.4 bits (220), Expect = 1e-22
 Identities = 78/276 (28%), Positives = 129/276 (46%), Gaps = 22/276 (7%)

Query: 3   KKVLTL-SAVMASMLFGAAAHAADTRIGVTIYKYDDNFMSVVRKAIEKDAKAAPDVQLLM 61
           KK+ TL SAV  S    A A A DT + + +   ++ F   +++  +K+A      +L++
Sbjct: 4   KKLATLVSAVALSATVSANALAKDT-VALVVSTLNNPFFVSMKEGAQKEADKL-GYELIV 61

Query: 62  NDSQNDQSKQNDQIDVLLAKGVKALAINLVDPAAAGTVIEKARGQNVPIVFFNKEPSRKA 121
            DSQN+ +K+   +  L  +G K L IN  D  A G  I+ A    +P++  ++  S   
Sbjct: 62  LDSQNNPAKELANVQDLTVRGTKVLLINPTDSDAVGNAIKMANQAKIPVITLDRVAS--- 118

Query: 122 LDSYDKAYYVGTDSKESGIIQGDLIAKHWAANPNWDLNKDGQIQFVLLKGEPGHPDAEAR 181
             S +   +V +D+   G + GD IAK         L +  ++  + L+G  G   A  R
Sbjct: 119 --SGEVVSHVASDNAFGGKVAGDFIAKK--------LGEGAKV--IQLEGIAGTSAARER 166

Query: 182 TTYVIKELNDKGLKTQQLALDTAMWDTAQAKDKMDAWLSGPNANKIEVVIANNDAMAMGA 241
               +K       K   LA   A +D  +  + M   L+      ++ V A ND MA+GA
Sbjct: 167 GAGFMKSAEKN--KFAMLASQPADFDRTKGLNVMQNLLTAHP--DVQAVFAQNDEMALGA 222

Query: 242 VEALKAHNKSSIPVFGVDALPEALALVKSGAMAGTV 277
           + AL+   K+ + V G D   + +  V+SG +A TV
Sbjct: 223 LRALQTAGKTDVLVVGFDGTQDGVKAVESGKLAATV 258