Pairwise Alignments

Query, 332 a.a., ABC-type sugar transport system, periplasmic component from Enterobacter asburiae PDN3

Subject, 296 a.a., ribose ABC transporter substrate-binding protein RbsB from Escherichia coli ECRC98

 Score = 86.3 bits (212), Expect = 9e-22
 Identities = 78/277 (28%), Positives = 128/277 (46%), Gaps = 24/277 (8%)

Query: 3   KKVLTL-SAVMASMLFGAAAHAADTRIGVTIYKYDDNFMSVVRKAIEKDAKAAPDVQLLM 61
           KK+ TL SAV  S    A A A DT I + +   ++ F   ++   +K+A       L++
Sbjct: 4   KKLATLVSAVALSATVSANAMAKDT-IALVVSTLNNPFFVSLKDGAQKEADKL-GYNLVV 61

Query: 62  NDSQNDQSKQNDQIDVLLAKGVKALAINLVDPAAAGTVIEKARGQNVPIVFFNKEPSRKA 121
            DSQN+ +K+   +  L  +G K L IN  D  A G  ++ A   N+P++  +++ ++  
Sbjct: 62  LDSQNNPAKELANVQDLTVRGTKILLINPTDSDAVGNAVKMANQANIPVITLDRQATKGE 121

Query: 122 LDSYDKAYYVGTDSKESGIIQGDLIAKHWAANPNWDLNKDGQ-IQFVLLKGEPGHPDAEA 180
           + S+     + +D+   G I GD IAK           K G+  + + L+G  G   A  
Sbjct: 122 VVSH-----IASDNVLGGKIAGDYIAK-----------KAGEGAKVIELQGIAGTSAARE 165

Query: 181 RTTYVIKELNDKGLKTQQLALDTAMWDTAQAKDKMDAWLSGPNANKIEVVIANNDAMAMG 240
           R     + +     K   LA   A +D  +  + M   L+      ++ V A ND MA+G
Sbjct: 166 RGEGFQQAV--AAHKFNVLASQPADFDRTKGLNVMQNLLTAHP--DVQAVFAQNDEMALG 221

Query: 241 AVEALKAHNKSSIPVFGVDALPEALALVKSGAMAGTV 277
           A+ AL+   KS + V G D  P+    V  G +A T+
Sbjct: 222 ALRALQTAGKSDVMVVGFDGTPDGEKAVNDGKLAATI 258