Pairwise Alignments

Query, 442 a.a., Superfamily II DNA and RNA helicases from Enterobacter asburiae PDN3

Subject, 626 a.a., ATP-dependent RNA helicase from Pseudomonas putida KT2440

 Score =  274 bits (700), Expect = 7e-78
 Identities = 172/448 (38%), Positives = 244/448 (54%), Gaps = 21/448 (4%)

Query: 5   TFSELELDESLLNALESKGFTRPTAIQAAAIPPALEGRDVLGSAPTGTGKTAAYLLPVLQ 64
           +F+ L L E+L+ A+E+ G+T+PT +Q  AIP  L+GRD++ +A TGTGKT  + LP+L+
Sbjct: 2   SFASLGLSEALVRAIEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPILE 61

Query: 65  HLLDFPR------KKSGP--PRILILTPTRELAMQVADHARELAANTHLDIATITGGVAY 116
            L  FP       ++ GP  PR+L+LTPTRELA QV D  +  A +  L  A I GGV  
Sbjct: 62  RL--FPAGHPDKSQRHGPRQPRVLVLTPTRELAAQVHDSFKVYARDLPLVSACIFGGVGM 119

Query: 117 MNHAEVFSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAG 176
               +  ++  D++VA  GRLL    +   D   VE L+LDEADRMLDMGF  D++ +  
Sbjct: 120 NPQIQAIAKGVDVLVACPGRLLDLAGQGKVDLAHVEILVLDEADRMLDMGFIHDVKKVLA 179

Query: 177 ETRWRNQTMLFSATLEGEAIKDFAERLLEDPVEVSATPSTRERKKIHQWYYRADNLEHKV 236
               + Q +LFSAT   + I D A++LL +P  +  TP     ++I Q  YR     HK 
Sbjct: 180 RLPAKRQNLLFSATFSKD-ITDLADKLLHNPERIEVTPPNTTVERIEQRVYRLP-ASHKR 237

Query: 237 ELLKHLLKQEDALRTIVFVRKRERVHELAEMLRNAGINNCYLEGEMAQIKRTEGIKRLTD 296
            LL HL+      + +VF R +   + LAE L   G+    + G  +Q  RT+ +     
Sbjct: 238 ALLAHLITLGAWEQVLVFTRTKHGANRLAEYLEKQGLTAAAIHGNKSQNARTKALADFKA 297

Query: 297 GRVNVLVATDVAARGIDIPDVSHVINFDMPRSGDTYLHRIGRTGRAGRKGIAISLVEAHD 356
             V VLVATD+AARG+DI  + HV+NF++P   + Y+HRIGRTGRAGR G AISLV   +
Sbjct: 298 NSVRVLVATDIAARGLDIDQLPHVVNFELPNVEEDYVHRIGRTGRAGRSGEAISLVAPDE 357

Query: 357 YLLLQKIGRYVDEPLKARVID-EL----RPTTRAPSEKMTGKPSKKALAKRAERKEKEKE 411
             LL+ I R      K R+ D +L         A   +   +P       R ++   E  
Sbjct: 358 EKLLKSIERVT----KQRIADGDLMGFDASQVEAEKPEARERPQNNGRGGRNQQARGEGG 413

Query: 412 KPRVKQRHRDTKNIGKRRKPSSATPETK 439
           K     R    K+ GK R+ ++A P+ K
Sbjct: 414 KDTNGGRKDKGKDKGKARQQAAAKPDDK 441