Pairwise Alignments

Query, 501 a.a., Ribose import ATP-binding protein RbsA from Escherichia coli HS(pFamp)R (ATCC 700891)

Subject, 513 a.a., fused D-xylose transporter subunits of ABC superfamily: ATP-binding components (NCBI) from Escherichia coli BW25113

 Score =  436 bits (1120), Expect = e-126
 Identities = 232/512 (45%), Positives = 335/512 (65%), Gaps = 12/512 (2%)

Query: 1   MEALLQLKGIDKAFPGVKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYARDA-- 58
           M  LL++K I K F  VKA+    L +  G +++L GENG+GKST+MKVL GIY   +  
Sbjct: 1   MPYLLEMKNITKTFGSVKAIDNVCLRLNAGEIVSLCGENGSGKSTLMKVLCGIYPHGSYE 60

Query: 59  GTLLWLGKETTFTGPKSSQEAGIGIIHQELNLIPQLTIAENIFLGREFVNRFGKIDWKTM 118
           G +++ G+E   +  + ++  GI IIHQEL L+ +LT+ ENIFLG E  +  G +D+  M
Sbjct: 61  GEIIFAGEEIQASHIRDTERKGIAIIHQELALVKELTVLENIFLGNEITHN-GIMDYDLM 119

Query: 119 YAEADKLLAKLNLRFKSDKLVGDLSIGDQQMVEIAKVLSFESKVIIMDEPTDALTDTETE 178
                KLLA+++L    D  VGDL +G QQ+VEIAK L+ + +++I+DEPT +LT+ ET 
Sbjct: 120 TLRCQKLLAQVSLSISPDTRVGDLGLGQQQLVEIAKALNKQVRLLILDEPTASLTEQETS 179

Query: 179 SLFRVIRELKSQGRGIVYISHRMKEIFEICDDVTVFRDGQFIAEREVASLTEDSLIEMMV 238
            L  +IR+L+  G   +YISH++ E+  I D + V RDGQ I  R+ A ++ED +I MMV
Sbjct: 180 ILLDIIRDLQQHGIACIYISHKLNEVKAISDTICVIRDGQHIGTRDAAGMSEDDIITMMV 239

Query: 239 GRKLEDQYPHLDKAPGDIRLKVDNLCG--------PGVNDVSFTLRKGEILGVSGLMGAG 290
           GR+L   YP+     GD  L++++L            VNDVSF+L++GEILG++GL+GAG
Sbjct: 240 GRELTALYPNEPHTTGDEILRIEHLTAWHPVNRHIKRVNDVSFSLKRGEILGIAGLVGAG 299

Query: 291 RTELMKVLYGALP-RTSGYVTLDGHEVVTRSPQDGLANGIVYISEDRKRDGLVLGMSVKE 349
           RTE ++ L+G  P +  G + +DG +V  R+ Q  +A GI  + EDRKRDG+V  M+V +
Sbjct: 300 RTETIQCLFGVWPGQWEGKIYIDGKQVDIRNCQQAIAQGIAMVPEDRKRDGIVPVMAVGK 359

Query: 350 NMSLTALRYFSRAGGSLKHADEQQAVSDFIRLFNVKTPSMEQAIGLLSGGNQQKVAIARG 409
           N++L AL  F+     L  A EQ+ + + I+   VKT S + AIG LSGGNQQK  +AR 
Sbjct: 360 NITLAALNKFTGGISQLDDAAEQKCILESIQQLKVKTSSPDLAIGRLSGGNQQKAILARC 419

Query: 410 LMTRPKVLILDEPTRGVDVGAKKEIYQLINQFKADGLSIILVSSEMPEVLGMSDRIIVMH 469
           L+  P++LILDEPTRG+D+GAK EIY+LINQ    G+++I++SSE+PEVLG+SDR++VMH
Sbjct: 420 LLLNPRILILDEPTRGIDIGAKYEIYKLINQLVQQGIAVIVISSELPEVLGLSDRVLVMH 479

Query: 470 EGHLSGEFTREQATQEVLMAAAVGKLNRVNQE 501
           EG L         TQE +M AA+   + V ++
Sbjct: 480 EGKLKANLINHNLTQEQVMEAALRSEHHVEKQ 511