Pairwise Alignments

Query, 501 a.a., Ribose import ATP-binding protein RbsA from Escherichia coli HS(pFamp)R (ATCC 700891)

Subject, 506 a.a., fused methyl-galactoside transporter subunits of ABC superfamily: ATP-binding components (NCBI) from Escherichia coli BW25113

 Score =  431 bits (1109), Expect = e-125
 Identities = 222/493 (45%), Positives = 325/493 (65%), Gaps = 4/493 (0%)

Query: 2   EALLQLKGIDKAFPGVKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYARDAGTL 61
           E LL++ GI+K+FPGVKAL    L V P  + AL+GENGAGKST++K L GIY +D+GT+
Sbjct: 11  EYLLEMSGINKSFPGVKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGTI 70

Query: 62  LWLGKETTFTGPKSSQEAGIGIIHQELNLIPQLTIAENIFLGREFVNRFGKIDWKTMYAE 121
           L+ GKE  F   K + E GI ++HQELNL+ Q ++ +N++LGR +  +   +D   MY E
Sbjct: 71  LFQGKEIDFHSAKEALENGISMVHQELNLVLQRSVMDNMWLGR-YPTKGMFVDQDKMYRE 129

Query: 122 ADKLLAKLNLRFKSDKLVGDLSIGDQQMVEIAKVLSFESKVIIMDEPTDALTDTETESLF 181
              +  +L++       VG LS+   QM+EIAK  S+ +K++IMDEPT +LT+ E   LF
Sbjct: 130 TKAIFDELDIDIDPRARVGTLSVSQMQMIEIAKAFSYNAKIVIMDEPTSSLTEKEVNHLF 189

Query: 182 RVIRELKSQGRGIVYISHRMKEIFEICDDVTVFRDGQFIAEREVASLTEDSLIEMMVGRK 241
            +IR+LK +G GIVYISH+M+EIF++CD+VTV RDGQ+IA   +A LT D +I MMVGR 
Sbjct: 190 TIIRKLKERGCGIVYISHKMEEIFQLCDEVTVLRDGQWIATEPLAGLTMDKIIAMMVGRS 249

Query: 242 LEDQYPHLDKAPGDIRLKVDNLCG---PGVNDVSFTLRKGEILGVSGLMGAGRTELMKVL 298
           L  ++P  +  PG++ L+V NL     P + DVSF L KGEILG++GL+GA RT++++ L
Sbjct: 250 LNQRFPDKENKPGEVILEVRNLTSLRQPSIRDVSFDLHKGEILGIAGLVGAKRTDIVETL 309

Query: 299 YGALPRTSGYVTLDGHEVVTRSPQDGLANGIVYISEDRKRDGLVLGMSVKENMSLTALRY 358
           +G   +++G +TL G ++   +  + + +G   ++E+R+  G+   + +  N  ++ +R 
Sbjct: 310 FGIREKSAGTITLHGKQINNHNANEAINHGFALVTEERRSTGIYAYLDIGFNSLISNIRN 369

Query: 359 FSRAGGSLKHADEQQAVSDFIRLFNVKTPSMEQAIGLLSGGNQQKVAIARGLMTRPKVLI 418
           +    G L ++  +      I    VKTP     IG LSGGNQQKV I R L+T+P++L+
Sbjct: 370 YKNKVGLLDNSRMKSDTQWVIDSMRVKTPGHRTQIGSLSGGNQQKVIIGRWLLTQPEILM 429

Query: 419 LDEPTRGVDVGAKKEIYQLINQFKADGLSIILVSSEMPEVLGMSDRIIVMHEGHLSGEFT 478
           LDEPTRG+DVGAK EIYQLI +    G  II++SSEMPE+LG++DRI+VM  G +SG   
Sbjct: 430 LDEPTRGIDVGAKFEIYQLIAELAKKGKGIIIISSEMPELLGITDRILVMSNGLVSGIVD 489

Query: 479 REQATQEVLMAAA 491
            +  TQ  ++  A
Sbjct: 490 TKTTTQNEILRLA 502



 Score = 85.1 bits (209), Expect = 5e-21
 Identities = 61/234 (26%), Positives = 111/234 (47%), Gaps = 14/234 (5%)

Query: 266 PGV---NDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALPRTSGYVTLDGHEVVTRSPQ 322
           PGV   ++V+  +R   I  + G  GAG++ L+K L+G   + SG +   G E+   S +
Sbjct: 24  PGVKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGTILFQGKEIDFHSAK 83

Query: 323 DGLANGIVYISEDRKRDGLVLGMSVKENMSLTALRYFSRAGGSLKHADEQQAVSDFIRLF 382
           + L NGI  + ++     LVL  SV +NM L   RY ++        D+ +   +   +F
Sbjct: 84  EALENGISMVHQELN---LVLQRSVMDNMWLG--RYPTKG----MFVDQDKMYRETKAIF 134

Query: 383 NVKTPSMEQA--IGLLSGGNQQKVAIARGLMTRPKVLILDEPTRGVDVGAKKEIYQLINQ 440
           +     ++    +G LS    Q + IA+      K++I+DEPT  +       ++ +I +
Sbjct: 135 DELDIDIDPRARVGTLSVSQMQMIEIAKAFSYNAKIVIMDEPTSSLTEKEVNHLFTIIRK 194

Query: 441 FKADGLSIILVSSEMPEVLGMSDRIIVMHEGHLSGEFTREQATQEVLMAAAVGK 494
            K  G  I+ +S +M E+  + D + V+ +G           T + ++A  VG+
Sbjct: 195 LKERGCGIVYISHKMEEIFQLCDEVTVLRDGQWIATEPLAGLTMDKIIAMMVGR 248