Pairwise Alignments

Query, 720 a.a., DNA helicase II from Escherichia coli HS(pFamp)R (ATCC 700891)

Subject, 728 a.a., DNA-dependent ATPase I and helicase II, nucleotide Excision Repair Complex from Pseudomonas putida KT2440

 Score =  912 bits (2356), Expect = 0.0
 Identities = 455/725 (62%), Positives = 568/725 (78%), Gaps = 7/725 (0%)

Query: 2   DVSYLLDSLNDKQREAVAAPRSNLLVLAGAGSGKTRVLVHRIAWLMSVENCSPYSIMAVT 61
           D+S LL+SLND QR+AVAA     LVLAGAGSGKTRVLVHRIAWL+ VE  SP+SI++VT
Sbjct: 5   DLSLLLNSLNDAQRQAVAATLGRQLVLAGAGSGKTRVLVHRIAWLIQVEQASPHSILSVT 64

Query: 62  FTNKAAAEMRHRIGQLMGTSQGGMWVGTFHGLAHRLLRAHHMDANLPQDFQILDSEDQLR 121
           FTNKAAAEMR RI QL+G +  GMWVGTFHGLAHRLLRAH  +A L Q+FQILDS+DQ R
Sbjct: 65  FTNKAAAEMRQRIEQLLGINPAGMWVGTFHGLAHRLLRAHWQEARLVQNFQILDSDDQQR 124

Query: 122 LLKRLIKAMNLDEKQWPPRQAMWYINSQKDEGLRPHHIQSYGNPVEQTWQKVYQAYQEAC 181
           L+KR+++ + LDE++WP RQA W+IN QKDEGLRP HIQ+ G+    T ++VY AY++AC
Sbjct: 125 LIKRVMRELGLDEQKWPARQAQWFINGQKDEGLRPQHIQAGGDLFLATMREVYTAYEQAC 184

Query: 182 DRAGLVDFAELLLRAHELWLNKPHILQHYRERFTNILVDEFQDTNNIQYAWIRLLAGDTG 241
           +RAG++DF+ELLLRA +LW + P +L+HY+ RF ++LVDEFQDTN +QYAW+RLLA    
Sbjct: 185 ERAGVIDFSELLLRALDLWRDHPGLLEHYQRRFRHVLVDEFQDTNAVQYAWLRLLARGGD 244

Query: 242 KVMIVGDDDQSIYGWRGAQVENIQRFLNDFPGAETIRLEQNYRSTSNILSAANALIENNN 301
            +M VGDDDQSIYGWRGA++ENI ++  DFP AE IRLEQNYRST  IL AANALI NN+
Sbjct: 245 SLMAVGDDDQSIYGWRGAKIENIHQYTADFPDAEMIRLEQNYRSTGGILKAANALIANNS 304

Query: 302 GRLGKKLWTDGADGEPISLYCAFNELDEARFVVNRIKTWQDNGGALAECAILYRSNAQSR 361
           GRLGK+LWTD  +GEP++LY A+NE DEAR+VV  I++    G A  E AILYRSNAQSR
Sbjct: 305 GRLGKELWTDMGEGEPLTLYAAYNEHDEARYVVETIESLVKQGNARNEIAILYRSNAQSR 364

Query: 362 VLEEALLQASMPYRIYGGMRFFERQEIKDALSYLRLIANRNDDAAFERVVNTPTRGIGDR 421
           VLEEALL+  +PYRIYGG RFFER EIK+A++YLRLI  R +DAA ERV+N P RGIG++
Sbjct: 365 VLEEALLRERIPYRIYGGQRFFERAEIKNAMAYLRLIEGRGNDAALERVINVPPRGIGEK 424

Query: 422 TLDVVRQTSRDRQLTLWQACRELLQEKALAGRAASALQRFMELIDALAQETADMPLHVQT 481
           T++ +R+ +R  QL++W+A  +L+  KAL GRAASAL  F+ELI+ LA +  DMPLH  T
Sbjct: 425 TVEAIREHARHSQLSMWEAMCQLIAAKALKGRAASALGAFIELIEGLAAKVVDMPLHTMT 484

Query: 482 DRVIKDSGLRTMYEQEKGEKGQTRIENLEELVTATRQFSYNEEDEDLMPLQAFLSHAALE 541
              I+ SGL T +++EKGEKGQ R+ENLEELV+A R F   +ED DL PL AFL HA+LE
Sbjct: 485 QTTIEQSGLITYHQEEKGEKGQARVENLEELVSAARNFESTDEDADLSPLSAFLGHASLE 544

Query: 542 AGEGQADTWQDAVQLMTMHSAKGLEFPQVFIVGMEEGMFPSQMSLDEGGRLEEERRLAYV 601
           AG+ QAD  +D++QLMT+HSAKGLEFP VF+VGMEEG+FP +MSL+E GRLEEERRLAYV
Sbjct: 545 AGDTQADEHEDSIQLMTLHSAKGLEFPYVFLVGMEEGLFPHKMSLEEPGRLEEERRLAYV 604

Query: 602 GVTRAMQKLTLTYAETRRLYGKEVYHRPSRFIGELPEECVEEVRLRATVSRPVSHQRMGT 661
           G+TRAM++L +TYAETRRLYG E Y++ SRF+ E+P   V+EVRL  +VSRP    +  T
Sbjct: 605 GITRAMRQLVMTYAETRRLYGSETYNKVSRFVREIPAGLVQEVRLSNSVSRPFGGAKTAT 664

Query: 662 --PMVENDS----GYKLGQRVRHAKFGEGTIVNMEGSGEHSRLQVAFQGQGIKWLVAAYA 715
              +  N S     + LGQRV+HA FGEG I+N EGSG  +R+QV F  +G KWL+  YA
Sbjct: 665 NSNLFANASIPQTAFNLGQRVQHAVFGEGVILNFEGSGAQARVQVNF-AEGSKWLMLGYA 723

Query: 716 RLESV 720
           +LE+V
Sbjct: 724 KLEAV 728