Pairwise Alignments

Query, 720 a.a., DNA helicase II from Escherichia coli HS(pFamp)R (ATCC 700891)

Subject, 806 a.a., ATP-dependent DNA helicase UvrD/PcrA from Hydrogenophaga sp. GW460-11-11-14-LB1

 Score =  602 bits (1552), Expect = e-176
 Identities = 349/806 (43%), Positives = 475/806 (58%), Gaps = 100/806 (12%)

Query: 4   SYLLDSLNDKQREAVAAPRSNLLVLAGAGSGKTRVLVHRIAWLMSVENCSPYSIMAVTFT 63
           S LL  LN +Q  AV  P  + L+LAGAGSGKTRVL  RIAWL+     SP  I+AVTFT
Sbjct: 12  SPLLAGLNAEQSAAVLLPAEHALILAGAGSGKTRVLTTRIAWLLQSGQVSPGGILAVTFT 71

Query: 64  NKAAAEMRHRIGQLMGTSQGGMWVGTFHGLAHRLLRAHHMDANLPQDFQILDSEDQLRLL 123
           NKAA EM  R+  ++  +  GMW+GTFHGL +R LRAHH  ANLP  FQILD++DQL  +
Sbjct: 72  NKAAKEMMTRLSAMLPINVRGMWIGTFHGLCNRFLRAHHKLANLPATFQILDTQDQLSAI 131

Query: 124 KRLIKAMNLDEKQWPPRQAMWYINSQKDEGLRPHHIQSYGNPVEQTWQKV--YQAYQEAC 181
           KRL K  N+D++++PP+Q  ++I+  K++G RPH + +     E+T +K+  Y  Y+E C
Sbjct: 132 KRLCKQFNVDDERYPPKQIQYFISGCKEDGQRPHDVPARD---EETRKKLELYALYEEQC 188

Query: 182 DRAGLVDFAELLLRAHELWLNKPHILQHYRERFTNILVDEFQDTNNIQYAWIRL------ 235
            R G+VDF EL+LR++E+  +   + +HY+ RF +IL+DEFQDTN +QYAWI++      
Sbjct: 189 QREGVVDFGELMLRSYEVLRDNDPVREHYQRRFRHILIDEFQDTNRLQYAWIKMFSAPPL 248

Query: 236 --LAGDTGKVMIVGDDDQSIYGWRGAQVENIQRFLNDFPGAETIRLEQNYRSTSNILSAA 293
             L      V  VGDDDQSIY +RGA+V N+  F+ +F     I+LEQNYRS SNIL +A
Sbjct: 249 EGLTPSGNAVFAVGDDDQSIYAFRGARVGNMADFVREFGVRHQIKLEQNYRSVSNILDSA 308

Query: 294 NALIENNNGRLGKKLWTDGADGEPISLYCAFNELDEARFVVNRIKTWQDNGGALAECAIL 353
           N LI +N  RLGK L TD   GEP+ ++ A ++  EA+++V+ +K     G   +E A+L
Sbjct: 309 NQLISHNTHRLGKNLRTDAGAGEPVRVFEATSDFAEAQWMVDEMKQLAREGIPRSEMAVL 368

Query: 354 YRSNAQSRVLEEALLQASMPYRIYGGMRFFERQEIKDALSYLRLIANRNDDAAFERVVNT 413
           YRSNAQSRV+E AL  A++PYR+YGG+RFFER EIK AL+YLRL+ N +DD +F RVVN 
Sbjct: 369 YRSNAQSRVVETALFNAALPYRVYGGLRFFERAEIKHALAYLRLLENAHDDTSFLRVVNF 428

Query: 414 PTRGIGDRTLDVVRQTSRDRQLTLWQACRELLQEKALAGRAASALQRFMELIDALAQETA 473
           P RGIG R+++ ++  +R    +L  A        A+ GRA  A+  F   ID + ++T 
Sbjct: 429 PPRGIGARSIEQLQDVARTSGCSLHDAV------SAVTGRAGVAVGNFAAKIDVMREQTE 482

Query: 474 DMPLHVQTDRVIKDSGLRTMYEQEKGEKGQTRIENLEELVTATRQF-------------- 519
              L    + V+  SGL   Y  E+  +GQ R+ENLEELV A   F              
Sbjct: 483 GRTLREIIELVLAHSGLIEHYRGER--EGQDRVENLEELVNAAESFVSIEGFGRDAVALP 540

Query: 520 -----------------------------SYNEEDEDLMPLQAFLSHAALEAGEGQADTW 550
                                           E  E L PL AFL+HAALE+G+ QA   
Sbjct: 541 VDELGKPLTQSPVSQGLDPNLPVVDEPLAPDAETGETLSPLAAFLTHAALESGDNQAQAG 600

Query: 551 QDAVQLMTMHSAKGLEFPQVFIVGMEEGMFPSQMSLDEGGRLEEERRLAYVGVTRAMQKL 610
           QDAVQLMT+H+AKGLEF  VFI GMEEG+FP + S+ +   LEEERRL YV +TRA ++L
Sbjct: 601 QDAVQLMTVHAAKGLEFDCVFITGMEEGLFPHENSMSDRDGLEEERRLMYVAITRARKRL 660

Query: 611 TLTYAETRRLYGKEVYHRPSRFIGELPEECVE--------------------EVRLRATV 650
            L++++TR L+G+  Y+  SRF  ELPEEC++                    +   R   
Sbjct: 661 YLSHSQTRMLHGQTRYNMKSRFFDELPEECLKWLTPPQPAWSAPMGGGGGQWQNGRRGFG 720

Query: 651 SRPVSHQ--------------RMGTPMVENDSGYKL--GQRVRHAKFGEGTIVNMEGSGE 694
             P + Q               +G    E D G ++  G  V H KFGEG ++ +EG+G+
Sbjct: 721 GAPAALQPSWSPGFKERGDPKGLGQTAPEPDRGTEIRAGLAVFHNKFGEGKVLAVEGAGD 780

Query: 695 HSRLQVAFQGQGIKWLVAAYARLESV 720
            +R QV F   G KWL  + A+L  +
Sbjct: 781 DARAQVNFTRHGTKWLALSVAKLTPI 806