Pairwise Alignments

Query, 720 a.a., DNA helicase II from Escherichia coli HS(pFamp)R (ATCC 700891)

Subject, 752 a.a., Superfamily I DNA and RNA helicases from Echinicola vietnamensis KMM 6221, DSM 17526

 Score =  490 bits (1262), Expect = e-143
 Identities = 282/753 (37%), Positives = 427/753 (56%), Gaps = 44/753 (5%)

Query: 7   LDSLNDKQREAVAAPRSNLLVLAGAGSGKTRVLVHRIAWLMSVENCSPYSIMAVTFTNKA 66
           L+ LN  QREAV      L+++AGAGSGKTRVL  RIA L+  +N  P+ I+A+TFTNKA
Sbjct: 4   LEGLNPPQREAVEHTEGPLMIIAGAGSGKTRVLTFRIAHLIRAKNVDPFQILALTFTNKA 63

Query: 67  AAEMRHRIGQLMGTSQGGMWVGTFHGLAHRLLRAHHMDANLPQDFQILDSEDQLRLLKRL 126
           A+EMR+RI +L+G      W+GTFH +  ++LR        P +F I D++D   L+K +
Sbjct: 64  ASEMRNRIERLIGLEARNTWMGTFHSIFAKILRVESEKLGFPSNFTIYDTDDSKSLIKSI 123

Query: 127 IKAMNLDEKQWPPRQAMWYINSQKDEGLR-------PHHIQSYGNPVEQTWQKVYQAYQE 179
           +K   LD+K + P   +  I+  K+  +        P+        ++    ++Y+AYQ+
Sbjct: 124 VKEKRLDDKVYKPNTVLSRISGAKNRLISWENYINDPYIKADDEAAMKPRMGEIYRAYQK 183

Query: 180 ACDRAGLVDFAELLLRAHELWLNKPHILQHYRERFTNILVDEFQDTNNIQYAWIRLLAGD 239
              ++  +DF +LL   + L+ + P +L  Y++RF  +LVDEFQDTN  QY   + LA  
Sbjct: 184 RLFKSSAMDFDDLLFNTNVLFRDHPDVLNKYQQRFRYVLVDEFQDTNLSQYLITKKLAAV 243

Query: 240 TGKVMIVGDDDQSIYGWRGAQVENIQRFLNDFPGAETIRLEQNYRSTSNILSAANALIEN 299
              + +VGDD QSIY +RGA ++NI  F  D+P    ++LEQNYRST NI+ AAN++IE 
Sbjct: 244 HQNICVVGDDAQSIYAFRGADIQNILNFEKDYPDLHVVKLEQNYRSTKNIVEAANSIIEK 303

Query: 300 NNGRLGKKLWTDGADGEPISLYCAFNELDEARFVVNRIKTWQDNGGAL-AECAILYRSNA 358
           N  +L K +WT   +G+ I L  + ++ +E R V + I   ++N     ++ AILYR+N+
Sbjct: 304 NKAQLKKNVWTQNGNGDLIELIKSASDNEEGRMVASTIFEEKNNKKLQNSDFAILYRTNS 363

Query: 359 QSRVLEEALLQASMPYRIYGGMRFFERQEIKDALSYLRLIANRNDDAAFERVVNTPTRGI 418
           QSR LEEAL + ++ Y+I GG+ F++R+EIKD ++Y R + N++D+ AF+R++N P RGI
Sbjct: 364 QSRALEEALRKMNISYKIVGGLSFYQRKEIKDLMAYFRYVVNQDDEEAFKRIINYPKRGI 423

Query: 419 GDRTLDVVRQTSRDRQLTLWQACRELLQEKALAGRAASALQRFMELIDALAQETADMPLH 478
           G  +++ +   + +  + LWQ          L+GRA++++  F  +I +   E      +
Sbjct: 424 GLSSVEKMMVAAYEHDIPLWQVVTN--SSSFLSGRASNSVSDFATMIKSFQMEVERKDAY 481

Query: 479 VQTDRVIKDSGLRTMYEQEKGEKGQTRIENLEELVTATRQFSYNEEDEDLMPLQAFLSHA 538
                + K SGL     ++K  +G  R EN++EL+ A +++  N E+ED   L AFL   
Sbjct: 482 EAASTIAKQSGLLRELYEDKTIEGLNRYENVQELLNAIKEYVDNPENED-KNLGAFLQEI 540

Query: 539 ALEAGEGQADTWQDAVQLMTMHSAKGLEFPQVFIVGMEEGMFPSQMSLDEGGRLEEERRL 598
           AL     +     DAV LMT+HS+KGLEF QVF+VG+EE +FPSQM +     LEEERRL
Sbjct: 541 ALLTDNDRDKDEMDAVTLMTIHSSKGLEFRQVFVVGLEEDLFPSQMMMQSREDLEEERRL 600

Query: 599 AYVGVTRAMQKLTLTYAETRRLYGKEVYHRPSRFIGELPEECVEEVRLRATVSRPV---- 654
            YV  TRAM+KL L+YA TR  +G+ +   PSRF+ E+   C+   + R    +P     
Sbjct: 601 FYVATTRAMEKLYLSYAITRYRFGRLLNCEPSRFLEEIDPSCIRVTKRRG--QQPTGSHF 658

Query: 655 -----SHQRMG-----TPMV-----------------ENDSGYKLGQRVRHAKFGEGTIV 687
                S  R G     TP V                  N S    G +V H KFG G ++
Sbjct: 659 GRNNDSEGRSGFVGLKTPSVRKNTTAKVHTPSPDFKPSNTSNLAAGMKVEHPKFGFGKVL 718

Query: 688 NMEGSGEHSRLQVAFQGQGIKWLVAAYARLESV 720
            +E  G + +  + F   G K L+ ++A+L  V
Sbjct: 719 KVEVEGLNKKATIGFDNFGEKTLLLSFAKLRIV 751