Pairwise Alignments

Query, 611 a.a., ATP-dependent DNA helicase RecQ from Escherichia coli HS(pFamp)R (ATCC 700891)

Subject, 715 a.a., ATP-dependent DNA 3 from Pseudomonas putida KT2440

 Score =  563 bits (1452), Expect = e-165
 Identities = 297/608 (48%), Positives = 415/608 (68%), Gaps = 17/608 (2%)

Query: 15  AKQVLQETFGYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALLLNGLTVVVS 74
           A++VL++ FGY  FR  Q  II+ V +G D LV+MPTGGGKSLC+Q+P LL  GLTVVVS
Sbjct: 5   AQRVLKDIFGYDSFRGRQAAIIECVANGGDALVLMPTGGGKSLCFQVPGLLRPGLTVVVS 64

Query: 75  PLISLMKDQVDQLQANGVAAACLNSTQTREQQLEVMTGCRTGQIRLLYIAPERLMLDNFL 134
           PLI+LM DQV  L   GV+AA LNST T EQQ E+    R G++++LY+APERL+    L
Sbjct: 65  PLIALMDDQVATLDELGVSAAALNSTLTAEQQRELAGRLRRGEVKMLYLAPERLVQPRML 124

Query: 135 EHLAHWNPVLLAVDEAHCISQWGHDFRPEYAALGQLRQRFPTLPFMALTATADDTTRQDI 194
           + L   +  L A+DEAHC+SQWGHDFRPEY  LGQL + FP +P +ALTATAD  TR++I
Sbjct: 125 DFLRDLDISLFAIDEAHCVSQWGHDFRPEYLQLGQLAELFPHVPRIALTATADMRTREEI 184

Query: 195 VRLLGLNDPLIQISSFDRPNIRYMLMEKFKPLDQLMRYVQEQRGKSGIIYCNSRAKVEDT 254
           V+ L L      +SSFDRPNI Y ++ K  P  QLM ++ E+RG +GI+YC SR KV++T
Sbjct: 185 VQRLHLQGAERFLSSFDRPNIFYRIVPKEAPRKQLMAFLGERRGNAGIVYCLSRKKVDET 244

Query: 255 AARLQSKGISAAAYHAGLENNVRADVQEKFQRDDLQIVVATVAFGMGINKPNVRFVVHFD 314
           AA L S+G  A  YHAGL    RA  Q +F  ++  I+VAT+AFGMGI+KPNVRFV H D
Sbjct: 245 AAFLCSQGFPALPYHAGLAAETRAANQHRFLNEEGLIMVATIAFGMGIDKPNVRFVAHLD 304

Query: 315 IPRNIESYYQETGRAGRDGLPAEAMLFYDPADMAWLRRCLEEKPQGQL-QDIERHKLNAM 373
           +P+++E+YYQETGRAGRDGLP++A + Y   DM  L++ L+     +  + IE+HKL+AM
Sbjct: 305 LPKSLEAYYQETGRAGRDGLPSDAWMAYGLQDMVMLKQMLQNSEGDERHKRIEQHKLDAM 364

Query: 374 GAFAEAQTCRRLVLLNYFGEGRQEPCGNCDICLDPPKQYDGSTDAQIALSTIGRVNQRFG 433
            A  E   CRR  LL YF E  ++PCG+CD C+D  + +D +  A+ ALS + R  QR+G
Sbjct: 365 LALCEETRCRRQSLLAYFDEILEQPCGHCDNCVDNIQTWDATEPARQALSAVFRTGQRYG 424

Query: 434 MGYVVEVIRGANNQRIRDYGHDKLKVYGMGRDKSHEHWVSVIRQLIHLGLVTQNIAQHSA 493
           +G++V+V+ G + +++R++GH+KL V+G+G+  +   W S+ RQL+  GLV  ++  +  
Sbjct: 425 VGHLVDVLLGKDTEKVRNFGHEKLSVFGVGKGLAEVEWRSLFRQLVARGLVDIDLEGYGG 484

Query: 494 LQLTEAARPVLRGESSLQLAVPRIVALKPKAMQK---SFGGN--------YDRKLFAKLR 542
           L+L+++ RP+LRGE +LQL       LKP+   K   S GG+         +R L+  LR
Sbjct: 485 LRLSDSCRPLLRGEVTLQLRRD----LKPQTTAKTSSSSGGSPASQLVRAEERDLWEALR 540

Query: 543 KLRKSIADESNVPPYVVFNDATLIEMAEQMPITASEMLSVNGVGMRKLERFGKPFMALIR 602
            LR+ +A+E +VPPYV+F D+TL+EM    P++ S+M  V+GVG RKLER+G+ F+ ++ 
Sbjct: 541 TLRRKLAEEHSVPPYVIFPDSTLLEMLRSQPVSLSDMAQVSGVGARKLERYGQAFLEVLN 600

Query: 603 AHVDGDDE 610
            +  G DE
Sbjct: 601 -NSGGTDE 607