Pairwise Alignments

Query, 611 a.a., ATP-dependent DNA helicase RecQ from Escherichia coli HS(pFamp)R (ATCC 700891)

Subject, 637 a.a., ATP-dependent DNA helicase RecQ from Hydrogenophaga sp. GW460-11-11-14-LB1

 Score =  496 bits (1278), Expect = e-145
 Identities = 280/623 (44%), Positives = 383/623 (61%), Gaps = 41/623 (6%)

Query: 18  VLQETFGYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALLLN----GLTVVV 73
           VL E FGY  FR  Q +I+  V +G D LV+MPTGGGKSLCYQ+PA++      GLTVVV
Sbjct: 21  VLHEVFGYDAFRGPQADIVSHVGAGGDALVLMPTGGGKSLCYQVPAIVRERTGQGLTVVV 80

Query: 74  SPLISLMKDQVDQLQANGVAAACLNSTQTREQQLEVMTGCRTGQIRLLYIAPERLMLDNF 133
           SPLI+LM DQV  L   GVAAA LNS+ + E   +V      G++ LLY APERL    F
Sbjct: 81  SPLIALMHDQVGALIEAGVAAAFLNSSLSLEDAQQVEKQMLRGELTLLYAAPERLTTPRF 140

Query: 134 LEHLAHWNP----VLLAVDEAHCISQWGHDFRPEYAALGQLRQRFPTLPFMALTATADDT 189
           L  L   +      L A+DEAHC+SQWGHDFRPEY AL  L +R+  +P +ALTATADD 
Sbjct: 141 LALLDSLHERGKLSLFAIDEAHCVSQWGHDFRPEYRALVVLHERYAGVPRVALTATADDL 200

Query: 190 TRQDIVRLLGLNDPLIQISSFDRPNIRYMLMEKFKPLDQLMRYVQEQRG-----KSGIIY 244
           TR DIV  L L +    ISSFDRPNIRY L+EK     QL R+++++        +GI+Y
Sbjct: 201 TRADIVERLQLQEARTFISSFDRPNIRYQLVEKKDATTQLQRFIRDEHTGADGHDAGIVY 260

Query: 245 CNSRAKVEDTAARLQSKGISAAAYHAGLENNVRADVQEKFQRDDLQIVVATVAFGMGINK 304
           C SR +VE+ AA L   G +A  YHAGL+  VR   Q++F R++  I+VAT+AFGMGI+K
Sbjct: 261 CQSRRRVEEVAAMLCEAGFNALPYHAGLDAAVRQRHQDRFLREEGLIMVATIAFGMGIDK 320

Query: 305 PNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPADMAWLRRCLEEKPQG-QLQ 363
           P+VRFV H D+P+NIE YYQETGRAGRDG PA A + Y   D+   RR ++E P   + +
Sbjct: 321 PDVRFVAHLDMPKNIEGYYQETGRAGRDGEPANAWMAYGLQDVVNQRRMIDESPAADEFK 380

Query: 364 DIERHKLNAMGAFAEAQTCRRLVLLNYFGEGRQEPCGNCDICLDPPKQYDGSTDAQIALS 423
            + R KL+A+   AEA  CRR+ LL+YFGE  Q PCGNCD CL PP+ +D +  A+  LS
Sbjct: 381 QVLRGKLDALLTLAEASDCRRVRLLSYFGEASQ-PCGNCDNCLTPPELHDATESARKLLS 439

Query: 424 TIGRVNQ----RFGMGYVVEVIRGANNQRIRDYGHDKLKVYGMGRDKSHEHWVSVIRQLI 479
            I RV Q     FG G++++++RG    +++ YGH+KL  +G+G D S   W +++RQLI
Sbjct: 440 CIYRVQQASGTAFGAGHIMDILRGKATDKVKQYGHEKLSTFGIGADLSETQWRALLRQLI 499

Query: 480 HLGLVTQNIAQHSALQLTEAARPVLRGESSLQLAVPRIVALKPKAMQKSFGGNY------ 533
               V  + A ++ L L +AAR +L+G+S + L      +L  KA   +  G        
Sbjct: 500 AREAVQVHDAPYNTLHLADAARDILKGQSPVWLK-----SLADKAASSARSGRQRASRAT 554

Query: 534 -----------DRKLFAKLRKLRKSIADESNVPPYVVFNDATLIEMAEQMPITASEMLSV 582
                      +R+    L+  R  +A E N+P +V+F+DATL  +A + P T +++  +
Sbjct: 555 AKDDGVPLSLSERECLEALKAWRAGVAREHNLPAFVIFHDATLRAIAGRKPETLADLDGI 614

Query: 583 NGVGMRKLERFGKPFMALIRAHV 605
            G+G +K E +G   + ++ A V
Sbjct: 615 AGIGQKKREAYGSDVLQVVSAFV 637