Pairwise Alignments

Query, 928 a.a., DNA polymerase I from Escherichia coli HS(pFamp)R (ATCC 700891)

Subject, 915 a.a., DNA polymerase I, 5 from Pseudomonas putida KT2440

 Score = 1098 bits (2841), Expect = 0.0
 Identities = 583/927 (62%), Positives = 692/927 (74%), Gaps = 18/927 (1%)

Query: 6   QNPLILVDGSSYLYRAYHAFPPLTNSAGEPTGAMYGVLNMLRSLIMQYKPTHAAVVFDAK 65
           Q PL+LVDGSSYLYRA+HA PPLT S G PTGA+ GVLNML+SL  QY  +  AVVFDAK
Sbjct: 3   QAPLVLVDGSSYLYRAFHALPPLTTSKGMPTGAVKGVLNMLKSLRKQYPDSLFAVVFDAK 62

Query: 66  GKTFRDELFEHYKSHRPPMPDDLRAQIEPLHAMVKAMGLPLLAVSGVEADDVIGTLAREA 125
           G TFRD +F  YK++RP MPDDLR QIEPLHA VKA+G PLL V GVEADDVIGTLAR +
Sbjct: 63  GGTFRDAMFAEYKANRPSMPDDLRVQIEPLHASVKALGYPLLCVEGVEADDVIGTLARSS 122

Query: 126 EKAGRPVLISTGDKDMAQLVTPNITLINTMTNTILGPEEVVNKYGVPPELIIDFLALMGD 185
              GRPV+ISTGDKDMAQLV  +ITL+NTMT ++L    V  K+GV PE IIDFLALMGD
Sbjct: 123 AALGRPVIISTGDKDMAQLVDGHITLVNTMTGSVLDVAGVHEKFGVGPEHIIDFLALMGD 182

Query: 186 SSDNIPGVPGVGEKTAQALLQGLGG-LDTLYAEPEKIAGLSFRGAKTMAAKLEQNKEVAY 244
             DNIPGVPGVGEKTA  LL G+GG L  LYA  +K+  L+ RGAKT+ AKLE++++ A+
Sbjct: 183 KVDNIPGVPGVGEKTAVGLLTGIGGGLSDLYANLDKVPALAIRGAKTLPAKLEEHRDAAF 242

Query: 245 LSYQLATIKTDVELELTCEQLEVQQPAAEELLGLFKKYEFKRWTADVEAGKWLQAKGAKP 304
           LSY+LATIK DV L++  E L   +P  E LL L+ + EFK W A+++          + 
Sbjct: 243 LSYELATIKVDVPLDVEVEALVCGEPDREALLALYTEMEFKSWVAELQ----------RD 292

Query: 305 AAKPQETSVADEAPEVTATVISYDNYVTILDEETLKAWIAKLEKAPVFAFDTETDSLDNI 364
           AAK  +    D AP V   V     Y TILD+    AW+ KL +AP+FAFDTET  LD  
Sbjct: 293 AAKAGD----DVAPAVEPAVKVEAKYETILDQARFDAWLEKLRQAPLFAFDTETTGLDAQ 348

Query: 365 SANLVGLSFAIEPGVAAYIPVAHDYLDAPDQISRERALELLKPLLEDEKALKVGQNLKYD 424
            A LVGLSFA+EP  AAY+P+AHDY  AP Q+ RE  L  LKPLLED    KVGQN KYD
Sbjct: 349 QAQLVGLSFAVEPHEAAYVPLAHDYEGAPVQLDREAVLLALKPLLEDPAKAKVGQNAKYD 408

Query: 425 RGILANYG--IELRGIAFDTMLESYILNSVAGRHDMDSLAERWLKHKTITFEEIAGKGKN 482
             ILAN    IE+RG+A+DTMLESY+LNS A RHDMDSLA+++L H TI FE+IAGKG  
Sbjct: 409 INILANGSPAIEMRGVAYDTMLESYVLNSTATRHDMDSLAQKYLDHTTIAFEDIAGKGAK 468

Query: 483 QLTFNQIALEEAGRYAAEDADVTLQLHLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIER 542
           QLTFNQI L++AG YAAEDAD+TL+LH  +   L +      V  +IEMPLVPVL+RIER
Sbjct: 469 QLTFNQINLDKAGPYAAEDADITLRLHHALQARLAQTPSVQPVLMDIEMPLVPVLARIER 528

Query: 543 NGVKIDPKVLHNHSEELTLRLAELEKKAHEIAGEEFNLSSTKQLQTILFEKQGIKPLKKT 602
            G  +D ++L   S EL +++AELE +A+E+AGE FNL S KQL TIL++K G+  L KT
Sbjct: 529 QGALVDAELLKVQSGELGVKMAELELRAYELAGETFNLGSPKQLGTILYDKLGMPVLSKT 588

Query: 603 PGGAPSTSEEVLEELALD-YPLPKVILEYRGLAKLKSTYTDKLPLMINPKTRRVHTSYHQ 661
             G PST+E VL+ELAL  YPLP+V+++YR L+KLKSTYTDKLP  INP+T R+HTSY Q
Sbjct: 589 AKGQPSTAEAVLDELALQGYPLPEVLMQYRSLSKLKSTYTDKLPGQINPRTGRIHTSYQQ 648

Query: 662 AVTATGRLSSTDPNLQNIPVRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLSRDK 721
           AV ATGRLSS+DPNLQNIP+R  EGRRIRQAFIA   Y +++ADYSQIELRIMAHL++D+
Sbjct: 649 AVAATGRLSSSDPNLQNIPIRTAEGRRIRQAFIASPGYKLLAADYSQIELRIMAHLAKDE 708

Query: 722 GLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIYGMSAFGLARQLNIPR 781
           GLL AF    D+HRATAAEVFG+ LE VT++QRRSAKAINFGLIYGMSAFGLA+Q+ + R
Sbjct: 709 GLLHAFRNDLDVHRATAAEVFGVALEDVTTDQRRSAKAINFGLIYGMSAFGLAKQIGVDR 768

Query: 782 KEAQKYMDLYFERYPGVLEYMERTRAQAKEQGYVETLDGRRLYLPDIKSSNGARRAAAER 841
           K++Q Y+D YF RYPGVL YMERTRAQA EQG+VETL GRRLYLPDI + N A R  AER
Sbjct: 769 KQSQDYIDRYFARYPGVLAYMERTRAQAAEQGFVETLFGRRLYLPDINAKNPALRKGAER 828

Query: 842 AAINAPMQGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHKDDVDAVAKQIH 901
            AINAPMQGTAADIIKRAM+ VD WL       R+I+QVHDELV EV +D V  V  +I 
Sbjct: 829 TAINAPMQGTAADIIKRAMVKVDNWLSESGLDARVILQVHDELVLEVREDLVQQVKDEIR 888

Query: 902 QLMENCTRLDVPLLVEVGSGENWDQAH 928
           Q M    +LDVPLLVE G G NWD+AH
Sbjct: 889 QHMSQAAQLDVPLLVEAGVGANWDEAH 915