Pairwise Alignments

Query, 315 a.a., HTH-type transcriptional regulator TreR from Escherichia coli HS(pFamp)R (ATCC 700891)

Subject, 340 a.a., DNA-binding transcriptional repressor from Pseudomonas putida KT2440

 Score = 97.4 bits (241), Expect = 4e-25
 Identities = 85/325 (26%), Positives = 150/325 (46%), Gaps = 25/325 (7%)

Query: 6   TIKDIARLSGVGKSTVSRVLNNESGVSQRTRERVEAVMNQHGFSPSRSARAMRGQSDKVV 65
           TIKD+A L+G+  +TVS VLN    VS++ R +VEA + +  + PS  AR+++ +S   +
Sbjct: 3   TIKDVAALAGISYTTVSHVLNKTRPVSEQVRLKVEAAIIELDYVPSAVARSLKARSTATI 62

Query: 66  AIIVTRLDSLSENLAVQTMLPAFYEQGYDPIMMESQFSPQLVAEHLGVLKRRNIDGVVL- 124
            ++V    +       + +  A    GY  I+  S  +PQ    +L VL  + IDG+V+ 
Sbjct: 63  GLLVPNSVNPYFAELARGIEDACERNGYCVILCNSDDNPQKQRSYLRVLLEKRIDGLVVA 122

Query: 125 -FGFTGITEEMLAHWQSSLVLLARDAKGFAS--VCYDDEGAIKILMQRLYDQGHRNISYL 181
             G      + LA  ++ +V++ R+ +G  +  V  D E    +  + L + GHR+++Y+
Sbjct: 123 SVGQDDDLLQSLASVRTPMVIVDRELEGVDADLVRIDHEQGAYLATRHLLELGHRDVAYI 182

Query: 182 GVPHSDVTTGKRRHEAYLAFCKAHKLNPVAALPG-------LAMKQGYENVAKVIT-PET 233
           G P     T  R      A  +A      A +PG            G+   A+V+     
Sbjct: 183 GGPAETGVTQLRLSGFRRAMAEAG-----APVPGSRVLHCDFTSPGGHAAAAQVLEGKRP 237

Query: 234 TALLCATDTLALGASKYLQEQRIDT---LQLASVGNTPLMKFLHPEIVTVDPGYAEAGRQ 290
           +A+    D +  G  +   E+ I     L +    +  L ++++P + TV     E G  
Sbjct: 238 SAIFAGNDMIGFGVLRAAAERNISVPGELSVIGFDDIELSRYVYPSLTTVGQSIRELGES 297

Query: 291 AACQLIAQVT----GRSEPQQIIIP 311
           AA  L+ ++     G +E Q+I+ P
Sbjct: 298 AASLLLTRIATPRQGAAE-QRIVAP 321