Pairwise Alignments

Query, 460 a.a., DNA repair protein RadA from Escherichia coli HS(pFamp)R (ATCC 700891)

Subject, 458 a.a., DNA repair protein RadA from Hydrogenophaga sp. GW460-11-11-14-LB1

 Score =  482 bits (1241), Expect = e-141
 Identities = 257/460 (55%), Positives = 334/460 (72%), Gaps = 11/460 (2%)

Query: 1   MAKAPKRAFVCNECGADYPRWQGQCSACHAWNTITEVRLAASPTVARNERLSGYAGSAGV 60
           MAK  K  ++C+ECG   P+W G+C  C+AWNT+ E  +A S   A+N     +A  A  
Sbjct: 1   MAKE-KTQYICSECGGASPKWLGKCPHCNAWNTLVE-SVAESTAPAKNR----FAALAKT 54

Query: 61  AKVQKLSDISLEELPRFSTGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQTLCKLA 120
           A+V  L+DI   ++ R  TG  E DRVLGGGVV G  +LIGG+PG GKSTLLLQ L  L 
Sbjct: 55  AEVTTLADIEATDVQRTPTGHDELDRVLGGGVVEGGVVLIGGDPGIGKSTLLLQALDSLQ 114

Query: 121 QQ-MKTLYVTGEESLQQVAMRAHRLGLPTDNLNMLSETSIEQICLIAEEEQPKLMVIDSI 179
           +   KTLYVTGEES  QVA+R+ RLGL    +++L+E  +E+I    E  +P + VIDSI
Sbjct: 115 RSGQKTLYVTGEESGAQVALRSRRLGLDGSQVSVLAEIQLEKILATLESTRPAIAVIDSI 174

Query: 180 QVMHMADVQSSPGSVAQVRETAAYLTRFAKTRGVAIVMVGHVTKDGSLAGPKVLEHCIDC 239
           Q ++   + S+PGSVAQVRE AA+LTR AK  G AIV+VGHVTK+G+LAGP+VLEH +D 
Sbjct: 175 QTVYSEQLTSAPGSVAQVRECAAHLTRAAKASGTAIVLVGHVTKEGALAGPRVLEHMVDT 234

Query: 240 SVLLDGDADSRFRTLRSHKNRFGAVNELGVFAMTEQGLREVSNPSAIFLSRGDEVTSGSS 299
            +  +GD  S FR +R+ KNRFGAVNE+GVFAMTE+GL+ VSNPSAIFLS+  E   GS 
Sbjct: 235 VLYFEGDTHSSFRLIRAIKNRFGAVNEIGVFAMTEKGLKGVSNPSAIFLSQHSEPVPGSC 294

Query: 300 VMVVWEGTRPLLVEIQALVDHSMMANPRRVAVGLEQNRLAILLAVLHRHGGLQMADQDVF 359
           VMV  EGTRP+LVEIQALVD S   +PRR++VGL+++RLA+LLAVLHRH G+   DQDVF
Sbjct: 295 VMVTLEGTRPMLVEIQALVD-SGGPSPRRLSVGLDRDRLAMLLAVLHRHAGVACMDQDVF 353

Query: 360 VNVVGGVKVTETSADLALLLAMVSSLRDRPLPQDLVVFGEVGLAGEIRPVPSGQERISEA 419
           VN VGGV++ E +ADLA++L++ SSLR +PLP+  + FGEVGLAGE+RP P GQ+R+ EA
Sbjct: 354 VNAVGGVRINEPAADLAVMLSITSSLRGKPLPKGFLAFGEVGLAGEVRPAPRGQDRLKEA 413

Query: 420 AKHGFRRAIVPAANVPK---KAPEGMQIFGVKKLSDALSV 456
           AK GF  A+VP AN+P+   KA EG+ + GV ++ +A+ +
Sbjct: 414 AKLGFSVAVVPKANLPRKNDKAFEGLTVHGVDRIEEAMEL 453