Pairwise Alignments

Query, 273 a.a., Ribosomal RNA small subunit methyltransferase A from Escherichia coli HS(pFamp)R (ATCC 700891)

Subject, 267 a.a., Ribosomal RNA small subunit methyltransferase A from Pseudomonas putida KT2440

 Score =  253 bits (646), Expect = 3e-72
 Identities = 132/259 (50%), Positives = 174/259 (67%), Gaps = 3/259 (1%)

Query: 9   HLARKRFGQNFLNDQFVIDSIVSAINPQKGQAMVEIGPGLAALTEPVGERLDQLTVIELD 68
           H ARKRFGQNFL+D  +ID I+ AIN + G+ ++EIGPG  ALTE +     QL V+ELD
Sbjct: 7   HRARKRFGQNFLHDAGIIDRILRAINAKAGEHLLEIGPGQGALTEGLLGSGAQLDVVELD 66

Query: 69  RDLAARLQTHPFLG-PKLTIYQQDAMTFNFGELAEKMGQPLRVFGNLPYNISTPLMFHLF 127
           +DL   LQ H F       ++Q DA+ F+F +L     + L+V GNLPYNISTPL+FHL 
Sbjct: 67  KDLVPILQ-HKFADRSNFRLHQGDALKFDFNQLGVPP-RSLKVVGNLPYNISTPLIFHLL 124

Query: 128 SYTDAIADMHFMLQKEVVNRLVAGPNSKAYGRLSVMAQYYCNVIPVLEVPPSAFTPPPKV 187
           S+   I DMHFMLQKEVV R+ AGP    +GRLS+M QY+C V  +  V P AF PPPKV
Sbjct: 125 SHAGLIRDMHFMLQKEVVERMAAGPGGGDWGRLSIMVQYHCRVEHLFNVGPGAFNPPPKV 184

Query: 188 DSAVVRLVPHATMPHPVKDVRVLSRITTEAFNQRRKTIRNSLGNLFSVEVLTGMGIDPAM 247
           DSA+VRLVPH  +P P KD  +L R+  EAFNQRRKT+RN++  L     +   G+D ++
Sbjct: 185 DSAIVRLVPHEVLPFPAKDHLLLERVVREAFNQRRKTLRNTMKGLLDSAAIEAAGVDGSL 244

Query: 248 RAENISVAQYCQMANYLAE 266
           R E + +A + ++A+ LA+
Sbjct: 245 RPEQLDLAAFVRLADQLAD 263