Pairwise Alignments

Query, 968 a.a., RNA polymerase-associated protein RapA from Escherichia coli HS(pFamp)R (ATCC 700891)

Subject, 948 a.a., RNA polymerase-associated protein RapA from Pseudomonas simiae WCS417

 Score =  937 bits (2423), Expect = 0.0
 Identities = 504/962 (52%), Positives = 654/962 (67%), Gaps = 26/962 (2%)

Query: 6   GQRWISDTESELGLGTVVAVDARTVTLLFPSTGENRLYARSDSPVTRVMFNPGDTITSHD 65
           GQRWISD+E+ELGLGTV+A D R +T+L+P+TG+ R YA  ++P+TRV F+PGD+IT  +
Sbjct: 8   GQRWISDSEAELGLGTVLAQDGRLLTVLYPATGDTRQYALRNAPLTRVRFSPGDSITHFE 67

Query: 66  GWQMQVEEVKEENGLLTYIGTRLDTEESGVALREVFLDSKLVFSKPQDRLFAGQIDRMDR 125
           GW+M V+EV + +GLL Y G  L+ +   V L E  L + + F    DRLFAGQID +  
Sbjct: 68  GWKMTVQEVDDVDGLLVYHG--LNGQNEQVTLPETQLSNFIQFRLASDRLFAGQIDPLAW 125

Query: 126 FALRYRARKYSSEQFRMPYSGLRGQRTSLIPHQLNIAHDVGRRHAPRVLLADEVGLGKTI 185
           F+LRY   +++S Q +    GL G R   I HQL+IA +V  R APRVLLADEVGLGKTI
Sbjct: 126 FSLRYHTLEHTSRQLQSSLWGLGGVRAQPIAHQLHIAREVADRIAPRVLLADEVGLGKTI 185

Query: 186 EAGMILHQQLLSGAAERVLIIVPETLQHQWLVEMLRRFNLRFALFDDERYAEAQHDAYNP 245
           EAG+++H+QLLSG A RVLI+VPE LQHQWLVEM RRFNL+ ALFD+ER+ E+  DA NP
Sbjct: 186 EAGLVIHRQLLSGRANRVLILVPENLQHQWLVEMRRRFNLQVALFDEERFIES--DATNP 243

Query: 246 FDTEQLVICSLDFARRSKQRLEHLCEAEWDLLVVDEAHHLVWSEDAPSREYQAIEQLAEH 305
           F+  QL + +L++    ++  + L  A WDLLVVDEAHHLVW ED  S EY  +EQLAE 
Sbjct: 244 FEDTQLALVALEWLVDDEKAQDALFAAGWDLLVVDEAHHLVWHEDKVSPEYALVEQLAEV 303

Query: 306 VPGVLLLTATPEQLGMESHFARLRLLDPNRFHDFAQFVEEQKNYRPVADAVAMLLAGNKL 365
           +PGVLLLTATPEQLG +SHFARLRLLDPNRFHD   F  E +NYRPVA+AV  LL   +L
Sbjct: 304 IPGVLLLTATPEQLGQDSHFARLRLLDPNRFHDLQAFRAESENYRPVAEAVQELLDKGRL 363

Query: 366 SNDELNMLGEMIGEQDIEPLLQAANSDSEDAQSARQELVSMLMDRHGTSRVLFRNTRNGV 425
           S      +   +G +  E LL A N D +   SAR  LV  L+DRHGT RVLFRNTR  V
Sbjct: 364 SPAAHKTIQGFLGNEG-EALLTAVN-DGDTEASAR--LVRELLDRHGTGRVLFRNTRAAV 419

Query: 426 KGFPKRELHTIKLPLPTQYQTAIKVSGIMGARKSAEDRARDMLYPERIYQ---EFEGDNA 482
           +GFP+R+LH   LP P +Y         +   + AE      LYPE  +Q   + E +N 
Sbjct: 420 QGFPERKLHAYPLPNPDEYLE-------LPLGEHAE------LYPEVSFQSQPDIEEENR 466

Query: 483 TWWNFDPRVEWLMGYLTSHRSQKVLVICAKAATALQLEQVLREREGIRAAVFHEGMSIIE 542
            WW FDPRVEWL+  L   +  KVLVICA A TA+ LE  LR R GI A VFHEGM+I+E
Sbjct: 467 -WWRFDPRVEWLIDQLKMLKRTKVLVICAHAETAMDLEDALRVRSGIPATVFHEGMNILE 525

Query: 543 RDRAAAWFAEEDTGAQVLLCSEIGSEGRNFQFASHMVMFDLPFNPDLLEQRIGRLDRIGQ 602
           RDRAAA+FA+E+ GAQVL+CSEIGSEGRNFQF+ H+V+FDLP +PDLLEQRIGRLDRIGQ
Sbjct: 526 RDRAAAYFADEEFGAQVLICSEIGSEGRNFQFSHHLVLFDLPSHPDLLEQRIGRLDRIGQ 585

Query: 603 AHDIQIHVPYLEKTAQSVLVRWYHEGLDAFEHTCPTGRTIYDSVYNGLINYLASPDQTEG 662
            H I++HVPYLE + Q  L +WYHE L+AF +TCPTG  +       L+  L + D  E 
Sbjct: 586 KHVIELHVPYLETSPQERLFQWYHEALNAFLNTCPTGNALQHQFGPRLLPLLENADDGE- 644

Query: 663 FDDLIKNCREQHEALKAQLEQGRDRLLEIHSNGGEKAQALAESIEEQDDDTNLIAFAMNL 722
           +  LI   R + E L+ +L  GRDRLLE++S G  +  AL E I EQDD   L  +   L
Sbjct: 645 WQALIDEARAERERLEEELHTGRDRLLELNSGGAGEGDALVEDILEQDDQFALPIYMETL 704

Query: 723 FDIIGINQDDRGDNMIVLTPSDHMLVPDFPGLSEDGITITFDREVALAREDAQFITWEHP 782
           FD  GI+ +D  +N ++L PS+ ML   FP   ++G+TIT+DR  AL+RED QFITWEHP
Sbjct: 705 FDAFGIDSEDHSENALILKPSEKMLDASFPLGDDEGVTITYDRNQALSREDMQFITWEHP 764

Query: 783 LIRNGLDLILSGDTGSSTISLLKNKALPVGTLLVELIYVVEAQAPKQLQLNRFLPPTPVR 842
           +++ G+DL+LSG  G++ ++L+KNKAL  GT+L+EL+YV E  AP+ LQL R+LPP  +R
Sbjct: 765 MVQGGMDLVLSGSMGNTAVALIKNKALKPGTVLLELLYVSEVVAPRSLQLGRYLPPAALR 824

Query: 843 MLLDKNGNNLAAQVEFETFNRQLNAVNRHTGSKLVNAVQQDVHAILQLGEAQIEKSARAL 902
            LLD NGN+L+++V F T N QL +V R + +K + A +  +   +  GE +I       
Sbjct: 825 CLLDANGNDLSSRVSFVTLNDQLESVPRASANKFIQAQRDQLTPRINAGEEKITPQHAER 884

Query: 903 IDAARNEADEKLSAELSRLEALRAVNPNIRDDELTAIESNRQQVMESLDQAGWRLDALRL 962
           +  A+         EL+RL AL+AVNP +RD EL A+ + R+Q +  LD+A  RL+A+R+
Sbjct: 885 VAEAKRRLAADTDEELARLTALQAVNPTVRDSELVALRTQREQGLAMLDKAALRLEAIRV 944

Query: 963 IV 964
           +V
Sbjct: 945 LV 946