Pairwise Alignments

Query, 968 a.a., RNA polymerase-associated protein RapA from Escherichia coli HS(pFamp)R (ATCC 700891)

Subject, 1137 a.a., Superfamily II DNA/RNA helicases, SNF2 family from Echinicola vietnamensis KMM 6221, DSM 17526

 Score = 68.9 bits (167), Expect = 2e-15
 Identities = 93/451 (20%), Positives = 186/451 (41%), Gaps = 46/451 (10%)

Query: 174  LLADEVGLGKTIEAGMILHQQLLSGAAERVLIIVPETLQHQWLVEMLRRFNLRFALFDDE 233
            +LAD++GLGKT++   +L     +G  +  LI+  +TL + W  E   +F     +   +
Sbjct: 699  ILADDMGLGKTLQVLTLLLHTKETGGKQPNLIVATKTLLYNW-EEQTAKFTPNLTIC--K 755

Query: 234  RYAEAQHDAYNPFDTEQLVICSLDFARRSKQRLEHLCEAEWDLLVVDEAHHLVWSEDAPS 293
             Y +++           L+I + D     K  +      E+  L+ DEA  +   ++  +
Sbjct: 756  YYGQSRKKLQKELRHHDLIITTYDTV---KSDIRFFGNMEFQYLITDEAQAI---KNTGT 809

Query: 294  REYQAIEQLAEHVPGVLLLTATPEQLGMESHFARLRLLDPNRFHDFAQFVEEQKNYRPVA 353
              Y+AI  L       L L+ TP +  +   +A +  ++P        F   + N+R + 
Sbjct: 810  DRYKAISLLNAQFR--LALSGTPIENSVMDLYALMNFVNPG-------FFGTEANFRNI- 859

Query: 354  DAVAMLLAGNKLSNDELNMLGEMIGEQDIEPLLQAANSDSEDAQSARQELVSMLMDRHGT 413
                 L  G    +  +  L     +  I+P +     +       ++  + +  +    
Sbjct: 860  ----FLEKGRVDKSPRMEAL-----QTAIKPFILRRTKEKVAKDLPKKTEMVLYCEMEPE 910

Query: 414  SRVLFRNTRNGVKGFPKRELHTIKLPLPTQYQTAIKV-SGIMGARKSAEDRARDMLYPER 472
             R  + + RN  KG    EL   K+      ++ +KV  G+M  R+  +     +L P+ 
Sbjct: 911  QRKAYESLRNYFKG----ELED-KISKEGLNKSNLKVLEGLMRLRQVCD---HPVLVPD- 961

Query: 473  IYQEFEGDNATWWNFDPRVEWLMGYLTSHRSQKVLVICAKAATALQLEQVLREREGIRAA 532
             +  ++G++A       +++ LM  +        L++ ++    L+L     E+EGI+ +
Sbjct: 962  -HYNYKGNSA-------KMDALMEQILEKTGNHKLLVFSQFTGMLKLIAKALEKEGIQYS 1013

Query: 533  VFHEGMSIIERDRAAAWFAEEDTGAQVLLCSEIGSEGRNFQFASHMVMFDLPFNPDLLEQ 592
                  S I R +A   F E+++    LL  + G  G N     ++ + D  +NP +  Q
Sbjct: 1014 YLDGQTSEISRRKAVQDFQEDESVRVFLLSLKAGGSGLNLTAGDYVFLVDPWWNPAVESQ 1073

Query: 593  RIGRLDRIGQAHDIQIHVPYLEKTAQSVLVR 623
             I R  RIGQ   +  +    + T +  +++
Sbjct: 1074 AIDRCYRIGQDKKVMAYRMICKDTVEEKILQ 1104