Pairwise Alignments

Query, 783 a.a., DNA polymerase II from Escherichia coli HS(pFamp)R (ATCC 700891)

Subject, 785 a.a., DNA polymerase II from Pseudomonas simiae WCS417

 Score = 1073 bits (2774), Expect = 0.0
 Identities = 527/784 (67%), Positives = 619/784 (78%), Gaps = 5/784 (0%)

Query: 3   QAGFILTRHWRDTPQGTEVSFWLATDNGPLQVTLAPQESVAFIPADQVPRAQHILQGEQG 62
           Q GF+LTRHWRDTP GTEVSFWLATD GP  + L  Q SV FIP         +L+GE+ 
Sbjct: 4   QQGFVLTRHWRDTPAGTEVSFWLATDQGPRFIRLPVQTSVMFIPEAHRKPLDWLLKGERD 63

Query: 63  FRLTPLALKDFHRQPVYGLYCRAHRQLMNYEKRLREGGVTVYEADVRPPERYLMERFITS 122
             L PL L DFH +PV GLY R HRQ M+ EKRLR  GV VYE DVRPPERY+MERFIT+
Sbjct: 64  IELRPLQLCDFHHRPVLGLYTRQHRQAMDVEKRLRAAGVDVYEGDVRPPERYMMERFITA 123

Query: 123 PVWVEGDMH-NGTIVNARLKPHPDYRPPLKWVSIDIETTRHGELYCIGLEGCGQRIVYML 181
           PVW  G     G + +A++KP PDYRPPLK VS+DIETT  G+LY I LEGCG+R VYML
Sbjct: 124 PVWFGGTPDATGVLCDAQMKPAPDYRPPLKLVSLDIETTAQGDLYSIALEGCGERQVYML 183

Query: 182 GPENGDASSLDFELEYVASRPQLLEKLNAWFANYDPDVIIGWNVVQFDLRMLQKHAERYR 241
           GP N  A+ +DF+L+Y  +R QLLE+LN W A +DPD IIGWNVVQFDLR+L +HA+R  
Sbjct: 184 GPPNKPAA-VDFKLDYCDTRAQLLERLNQWLALHDPDAIIGWNVVQFDLRVLHEHAQRLN 242

Query: 242 LPLRLGRDNSELEWREHGFKNGVFFAQAKGRLIIDGIEALKSAFWNFSSFSLETVAQELL 301
           +PL LGR    + WREHG +N  +FA A GRLIIDGIEAL+SA W+F SFSLE VAQ LL
Sbjct: 243 VPLMLGRGEEPMAWREHGSRNH-YFAAAAGRLIIDGIEALRSATWSFESFSLENVAQTLL 301

Query: 302 GEGKSIDNPWDRMDEIDRRFAEDKPALATYNLKDCELVTQIFHKTEIMPFLLERATVNGL 361
           GEGK I  P+ RMDEI+R FAEDKPALA YNLKDCELVT+IF KTE++ FLLERA+V GL
Sbjct: 302 GEGKDISTPYQRMDEINRMFAEDKPALARYNLKDCELVTRIFEKTELLKFLLERASVTGL 361

Query: 362 PVDRHGGSVAAFGHLYFPRMHRAGYVAPNLGEVPPHASPGGYVMDSRPGLYDSVLVLDYK 421
           P DR+GGSVAAF HLY P MHR G+VAPNLG+ PP ASPGG+VMDSRPGLY+SVLVLDYK
Sbjct: 362 PADRNGGSVAAFTHLYMPLMHRQGFVAPNLGDKPPQASPGGFVMDSRPGLYESVLVLDYK 421

Query: 422 SLYPSIIRTFLIDPVGLVEGMAQPDPEHSTEGFLDAWFSREKHCLPEIVTNIWHGRDEAK 481
           SLYPSIIR+FLIDPVGL+EG+  PD   S EGF  A FSR +HCLP IV  +  GR+ AK
Sbjct: 422 SLYPSIIRSFLIDPVGLIEGLKHPDDSESVEGFRGARFSRTRHCLPSIVARVSEGREVAK 481

Query: 482 RQGNKPLSQALKIIMNAFYGVLGTTACRFFDPRLASSITMRGHQIMRQTKALIEAQGYDV 541
           R+ N PLSQALKIIMNAFYGVLG++ CRFFD RLASSITMRGHQIMRQT+ L+EAQGY+V
Sbjct: 482 REHNAPLSQALKIIMNAFYGVLGSSGCRFFDTRLASSITMRGHQIMRQTRELVEAQGYEV 541

Query: 542 IYGDTDSTFVWLKGAHSEEEAAKIGRALVQHVNAWWAETLQKQ-RLTSALELEYETHFCR 600
           IYGDTDSTFVWL  AH +E+A +IGRALVQHVN WW E LQ    L SALEL+YETHF R
Sbjct: 542 IYGDTDSTFVWLGSAHGQEDAGRIGRALVQHVNDWWREHLQTAFGLQSALELQYETHFTR 601

Query: 601 FLMPTIRGADTGSKKRYAGLIQEGD-KQRMVFKGLETVRTDWTPLAQQFQQELYLRIFRN 659
           FLMPTIRGA+ GSKKRYAGL+   D ++ MV+KGLETVR+DW+PLA++FQQELY RIF  
Sbjct: 602 FLMPTIRGAEEGSKKRYAGLVVHSDGREEMVYKGLETVRSDWSPLARRFQQELYQRIFHR 661

Query: 660 EPYQEYVRQTIDKLMAGELDARLVYRKRLRRPLSEYQRNVPPHVRAARLADEENQKRGRP 719
           +P+Q+Y+R  +   ++GE D  L+YRKRLRR L +Y+RNVPPHVRAARLADE N +  RP
Sbjct: 662 QPHQDYIRDYVRLTLSGEFDELLIYRKRLRRQLDDYERNVPPHVRAARLADEYNDRMNRP 721

Query: 720 LQYQNRGTIKYVWTTNGPEPLDYQRSPLDYEHYLTRQLQPVAEGILPFIEDNFATLMTGQ 779
            QYQ  G I YV + NGPEPL+ + +P+DY+HY+TRQLQPVA+ ILPF+ D+F+TL+ GQ
Sbjct: 722 RQYQRGGWISYVISVNGPEPLEVRHAPIDYDHYVTRQLQPVADAILPFVNDDFSTLVGGQ 781

Query: 780 LGLF 783
           +GLF
Sbjct: 782 MGLF 785