Pairwise Alignments

Query, 275 a.a., Putative aliphatic sulfonates transport permease protein SsuC from Escherichia coli HS(pFamp)R (ATCC 700891)

Subject, 273 a.a., ABC transporter permease from Pseudomonas simiae WCS417

 Score =  150 bits (379), Expect = 3e-41
 Identities = 93/273 (34%), Positives = 144/273 (52%), Gaps = 17/273 (6%)

Query: 3   VLINEKLHSRRLKWRWPLSRQVTLSIGTLAVLLTVWWTVAALQLISPLFLPPSQQVLAKL 62
           V IN     RRLK    L   V + +  L V++ V W         P +  P+   +A  
Sbjct: 14  VAINRSAWPRRLKG---LVLPVLILL-VLEVVVRVGWL--------PSYQMPAPSEIAVT 61

Query: 63  LTIAGPQGFMDATLWQHLAASLTRIVLALLAAVVIGIPVGIAMGLSPTVRGILDPVIELY 122
           LT        + +LW+H++ASL R++L       + +     +GLS      L+P     
Sbjct: 62  LT-----DLAEGSLWKHISASLGRVLLGFAIGASLALVFAAWVGLSREAEAYLEPTFAGL 116

Query: 123 RPVPPLAYLPLMVIWFGIGETSKILLIYLAIFAPVAMSALAGVKSAQQVRIRAAQSLGAS 182
           R +P LA++PL+++W GI ETSKI+LI +  F PV ++ +A ++   +  +   Q  G S
Sbjct: 117 RSIPSLAWVPLLLLWLGIDETSKIVLIAIGAFFPVYLNGVAAIRDIDRKLVEVGQMYGFS 176

Query: 183 RAQVLWFVILPGALPEILTGLRIGLGVGWSTLVAAELIAATRGLGFMVQSAGEFLATDVV 242
           R +++  ++LP ALP + TGLR GL + W  LVAAELIAAT+GLG+++    E    D+V
Sbjct: 177 RWRLVRRILLPAALPGLFTGLRSGLSLAWMFLVAAELIAATKGLGYLLSDGRETSRPDIV 236

Query: 243 LAGIAVIAIIAFLLELGLRALQRRLTPWHGEVQ 275
           LA I V+A +  + +  L  L++R   W    Q
Sbjct: 237 LAAIIVLASLGKVSDGLLATLEKRCLAWRDTFQ 269