Pairwise Alignments

Query, 590 a.a., HTH-type transcriptional regulator SgrR from Escherichia coli HS(pFamp)R (ATCC 700891)

Subject, 559 a.a., putative dipeptide/oligopeptide/nickel ABC-type transport system periplasmic component from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

 Score =  149 bits (375), Expect = 4e-40
 Identities = 137/553 (24%), Positives = 240/553 (43%), Gaps = 20/553 (3%)

Query: 42  AGKPQTVTVSELAERCFCSERHVRTLLRQAQEAGWLEWQAQSGRGKRGQLRFLVTPESLR 101
           AG+   + + E+A    CS R+ R  L++  +  WL+WQ Q GRGKR +L  L +PE L 
Sbjct: 17  AGQTHELQMQEIAAIFGCSVRNCRIALKKMHQEKWLDWQPQRGRGKRSRLHLLTSPEKLF 76

Query: 102 NAMMEQALETGKQQDVLELAQLAPGELRTLLQPFMGGQWQNDTPTLRIPYYRPLEPLQPG 161
           +  + + LE     +VL         L  L     G Q ++    +RIPYYR L+PL P 
Sbjct: 77  SQNVNKLLEKQDYGNVLRFIGNDKYLLDRLSLWRFGVQDKSSETRVRIPYYRNLDPLNPL 136

Query: 162 FLPGRAEQHLAGQIFSGLTRFDNNTQRPIGDLAHHWETSTDGLRWDFYLRSTLHWHNGDA 221
               R E+HL  Q  SGLTR+D    R + D+AH+W  + D  RW+F+L+ST  + +G  
Sbjct: 137 VPLRRTERHLLRQCLSGLTRYDAVQGRIVPDIAHYWTHNEDFTRWEFWLKSTARFADGCE 196

Query: 222 VKASHLHQRLLMLLQLPALDQLFISVKRIEVTHPQCLTFFLHRPDYWLAHRLASYCSHLV 281
           + AS + + LL   Q P    +F  +K I    P  L    H P   L   LA+  + L 
Sbjct: 197 LDASAVQRCLLAASQSPQFAPIFSPIKTITADAPWHLVIETHHPVRRLDCLLATQPTMLF 256

Query: 282 HPQFPLIG-TGPFRLTQFTAELVRLESHDYYHLRHPLLKAVEYWITPPLFEKDLGTSCRH 340
             Q   I  TG F L + +   + L  + ++H   P L  +  +   P   + +  S   
Sbjct: 257 DYQHGHIRCTGAFHLQEHSDNFMVLRRNQHWHQARPGLDEITIFTWAP---EHISMSF-- 311

Query: 341 PVQITIGKPEELQRVSQVSS-GISLGFCYLTLRKSPRLSLWQARKVISIIHQS-GLLQTL 398
              I + + EE+Q    ++   +    C++ L      +    R+ I+ + Q   LL   
Sbjct: 312 ---IPLLRGEEVQDDRPLNERSLEQSCCFVLLDGDGAFADEAGRRFINYLLQPVELLSQT 368

Query: 399 EVGE---NLITASHALLPGWT---IPHWQVPDEVKLPKTLTLVYHLPIELHTMAERLQAT 452
           ++ +    +++ +  +LP W    +    +     L + + +      EL  +A  ++  
Sbjct: 369 QLPDEYARILSVAQGMLPQWNHRPVDFGGITAPFNLRQPVIISTFQQPELVELAGAIRRL 428

Query: 453 LSAEGCELTIIFHNAKNWDDTTLLAHADLMMGDRLIGEAPEYTLEQWLRCDPLWPHVFDA 512
           L        I   +A +  +  L   AD+ + + ++         +WL    L+  + ++
Sbjct: 429 LERWHIRAEIRI-DAFDHFNNQLRPPADIWLSNFMLDTLSVPAFLEWLASTALFTRLPES 487

Query: 513 PAYAHLQSTLDAVQVMPDEENRFNALKAVFSQLMADATLTPLFNYHYRISAPPGVNGVRL 572
               +L + L  + +  D+E  F  + A F ++     + PL ++    +         L
Sbjct: 488 QR-QNLNALLPTI-LNSDDEQAFATIAAFFHEMTHQRYVIPLLHHWMEFATEKSFTWRDL 545

Query: 573 TPRGWFEFTEAWL 585
              GW +F++ WL
Sbjct: 546 NTLGWPDFSQLWL 558