Pairwise Alignments

Query, 590 a.a., HTH-type transcriptional regulator SgrR from Escherichia coli HS(pFamp)R (ATCC 700891)

Subject, 551 a.a., transcriptional DNA-binding transcriptional activator of sgrS sRNA from Escherichia coli BL21

 Score =  191 bits (484), Expect = 9e-53
 Identities = 158/574 (27%), Positives = 261/574 (45%), Gaps = 51/574 (8%)

Query: 33  QYQRLWQPSAGKPQTVTVSELAERCFCSERHVRTLLRQAQEAGWLEWQAQSGRGKRGQLR 92
           Q+ RLWQ   GK Q  T++ELA    CS RH+RTLL   Q+ GWL W+A+ GRGKR +L 
Sbjct: 9   QFIRLWQCCEGKSQDTTLNELAALLSCSRRHMRTLLNTMQDRGWLTWEAEVGRGKRSRLT 68

Query: 93  FLVTPESLRNAMMEQALETGKQQDVLELAQLA--PGELRTLLQPFMGGQWQNDTPTLRIP 150
           FL T  +L+    E  LE   Q  + +L QL      +R +L   +G  ++     LR+ 
Sbjct: 69  FLYTGLALQQQRAEDLLE---QDRIDQLVQLVGDKATVRQMLVSHLGRSFRQGRHILRVL 125

Query: 151 YYRPLEPLQPGFLPGRAEQHLAGQIFSGLTRFDNNTQRPIGDLAHHWETSTDGLRWDFYL 210
           YYRPL  L PG    R+E H+A QIFS LTR +        D+AHHW+     L W F+L
Sbjct: 126 YYRPLRNLLPGSALRRSETHIARQIFSSLTRINEENGELEADIAHHWQ-QISPLHWRFFL 184

Query: 211 RSTLHWHNGDAVKASHLHQRLLMLLQLPALDQLFISVKRIEVTHPQCLTFFLHRPDYWLA 270
           R  +H+H+G  ++   +   L  +  LP    L+  +  I    P  L   L +PD WL 
Sbjct: 185 RPGVHFHHGRELEMDDVIASLKRINTLP----LYSHIADIVSPTPWTLDIHLTQPDRWLP 240

Query: 271 HRLASYCSHLVHPQFPL--------IGTGPFRLTQFTAELVRLESHDYYHLRHPLLKAVE 322
             L    + ++  ++          IGTGP+ + + +   +++++ D +     L+  V 
Sbjct: 241 LLLGQVPAMILPREWETLSNFASHPIGTGPYAVIRNSTNQLKIQAFDDFFGYRALIDEVN 300

Query: 323 YWITPPLFEKDLGTSCRHPVQITIGKPEELQRVSQVSSGISLGFCYLTL--RKSPRLSLW 380
            W+ P + ++  G      + +   + EE +  S++  G     CY  L   ++ R +  
Sbjct: 301 VWVLPEIADEPAG-----GLMLKGPQGEEKEIESRLEEG-----CYYLLFDSRTHRGANQ 350

Query: 381 QARKVIS-IIHQSGLLQTLEVG-ENLITASHALLPGWTIPHWQVPDEVKLPKTLTLVYHL 438
           Q R  +S ++  + L+   E   + L   ++ LLP W        ++    ++L L ++ 
Sbjct: 351 QVRDWVSYVLSPTNLVYFAEEQYQQLWFPAYGLLPRWHHARTIKSEKPAGLESLILTFYQ 410

Query: 439 PIELH-TMAERLQATLSAEGCELTIIFHNAKNWDDTTLLAHADLMMGDRLIGEAPEYTLE 497
               H  +A  +Q  L++    L I   +   W +  +   +D+ +       +  +TL 
Sbjct: 411 DHSEHRVIAGIMQQILASHQVTLEIKEISYDQWHEGEI--ESDIWL------NSANFTLP 462

Query: 498 QWLRCDPLWPHVFDAPAYAH---LQSTLDAVQVMPDEENRFNALKAVFSQLMADATLTPL 554
                  L+ H+ + P   H   +    DA +    E N  N  +    QL+A   + PL
Sbjct: 463 LDF---SLFAHLCEVPLLQHCIPIDWQADAARWRNGEMNLANWCQ----QLVASKAMVPL 515

Query: 555 FNYHYRISAPPGVNGVRLTPRGWFEFTEAWLPAP 588
            ++   I     + G+R+   GWF+F  AW   P
Sbjct: 516 IHHWLIIQGQRSMRGLRMNTLGWFDFKSAWFAPP 549