Pairwise Alignments

Query, 590 a.a., putative multidrug resistance ABC transporter ATP-binding/permease protein YheI from Escherichia coli HS(pFamp)R (ATCC 700891)

Subject, 602 a.a., Lipid A export ATP-binding/permease protein MsbA from Pseudomonas putida KT2440

 Score =  269 bits (688), Expect = 2e-76
 Identities = 178/583 (30%), Positives = 305/583 (52%), Gaps = 22/583 (3%)

Query: 1   MRLFAQLSWYFRREWRRYLGAVALLVIIAMLQLVPPKVVGIVVDGVTEQHFTTGQILMWI 60
           ++++ +L  Y +     +L ++   VI A  Q +   ++   VDG++         + ++
Sbjct: 14  LKIYFRLLSYVKPYVGIFLLSIVGFVIFASTQPMLAGILKYFVDGLSNPEAVLFPNVPYL 73

Query: 61  ATMVLIAVVVYLLRYV--WRVL--------LFGASYQLAVELREDYYRQLSRQHPEFYLR 110
             + L+  V  L+  +  W+ L        L   S  L  +LR   + +L      ++  
Sbjct: 74  RDLQLLQAVPLLIILIAAWQGLGSFLGNYFLAKVSLSLVHDLRVALFNKLLVLPNRYFDN 133

Query: 111 HRTGDLMARATNDVDRVVFAAGEGVLTLVDSLVMGCAVLIMMSTQI--SWQLTLFALLPM 168
           H +G L++R T +V  V  AA + +  ++     G  V+ + +  +  +W LTL  +  +
Sbjct: 134 HNSGHLISRITFNVTMVTGAATDAIKVVIRE---GLTVVFLFAYLLWMNWHLTLVMVAIL 190

Query: 169 PVMAIMIKRNGDALHERFKLAQAAFSSLNDRTQESLTSIRMIKAFGLEDRQSALFAADAE 228
           PV+A+M+        ++ K  Q A   +     E++   R++++FG E  +   F   ++
Sbjct: 191 PVIAVMVSIASKKFRKQSKKIQVAMGDVTHVASETIQGYRVVRSFGGEAYEQQRFGQASQ 250

Query: 229 DTGKKNMRVARIDARFDPTIYIAI--GMANLLAIGGGSWMVVQGSLTLGQLTSFMMYLGL 286
               K +R+ +  + + P + + I   MA L+ +     + ++G  T G L +++   GL
Sbjct: 251 SNTDKQLRMTKTGSLYTPMLQLVIYSAMAALMFLV----LFLRGDSTAGDLVAYITAAGL 306

Query: 287 MIWPMLALAWMFNIVERGSAAYSRIRAMLAEAPVVNDGSEPVPEGRGELDVNIHQFTYPQ 346
           +  P+  L+ + + +++G A    I   L EAP V+ G+       G L+V    FTYP 
Sbjct: 307 LPKPIRQLSEVSSTIQKGLAGAESIFEQLDEAPEVDTGTVEKERVEGRLEVRNLSFTYPG 366

Query: 347 TDHPALENVNFALKPGQMLGICGPTGSGKSTLLSLIQRHFDVSEGDIRFHDIPLTKLQLD 406
           T+   L +++F  +PGQM+ + G +GSGKSTL +LI R +   +G I    + +   +L 
Sbjct: 367 TEREVLSDISFVAEPGQMIALVGRSGSGKSTLAALIPRFYHHDKGQILLDGVEIEHYRLR 426

Query: 407 SWRSRLAVVSQTPFLFSDTVANNIALG-CPNATQQEIEHVARLASVHDDILRLPQGYDTE 465
           + R  ++ V+Q   LF+DTVANNIA G    A + +IE  A  A   + + RLP+G+DTE
Sbjct: 427 NLRRHVSQVTQHVTLFNDTVANNIAYGDLAGAPRADIEAAAADAYAKEFVDRLPKGFDTE 486

Query: 466 VGERGVMLSGGQKQRISIARALLVNAEILILDDALSAVDGRTEHQILHNLRQWGQGRTVI 525
           VGE GV+LSGGQ+QR++IARALL NA +LILD+A SA+D  +E  I   L    QGRT +
Sbjct: 487 VGENGVLLSGGQRQRLAIARALLKNAPLLILDEATSALDTESERHIQAALDHVMQGRTTL 546

Query: 526 ISAHRLSALTEASEIIVMQHGHIAQRGNHDVLAQQSGWYRDMY 568
           + AHRLS + +A +I+VM  G + +RG H  L   +G Y  ++
Sbjct: 547 VIAHRLSTIEKADQILVMDQGRLVERGTHTELLAANGHYARLH 589