Pairwise Alignments

Query, 673 a.a., UvrABC system protein B from Escherichia coli HS(pFamp)R (ATCC 700891)

Subject, 671 a.a., excinuclease UvrABC protein B from Pseudomonas putida KT2440

 Score =  922 bits (2384), Expect = 0.0
 Identities = 465/670 (69%), Positives = 562/670 (83%), Gaps = 4/670 (0%)

Query: 5   FKLNSAFKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLA 64
           F+L + F+P+GDQPEAIR+L EG+E GL+HQTLLGVTGSGKTF+IANVI  +QRPT+VLA
Sbjct: 4   FQLVTRFQPAGDQPEAIRQLVEGIEAGLSHQTLLGVTGSGKTFSIANVIQQVQRPTLVLA 63

Query: 65  PNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRL 124
           PNKTLAAQLYGE K FFP NAVEYFVSYYDYYQPEAYVPSSDTFIEKDAS+N+HIEQMRL
Sbjct: 64  PNKTLAAQLYGEFKAFFPNNAVEYFVSYYDYYQPEAYVPSSDTFIEKDASINDHIEQMRL 123

Query: 125 SATKAMLERRDVVVVASVSAIYGLGDPDLYLKMMLHLTVGMIIDQRAILRRLAELQYARN 184
           SATKA+LERRD ++V +VS IYGLG P+ YLKM+LH+  G  +DQRA+LRRLA+LQY RN
Sbjct: 124 SATKALLERRDAIIVTTVSCIYGLGSPETYLKMVLHVDRGDKLDQRALLRRLADLQYTRN 183

Query: 185 DQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIY 244
           +  F R TFRVRG+VIDIFPAESD  A+R+ELFD+EVE ++ FDPLTG++   +PRFT Y
Sbjct: 184 EMDFARATFRVRGDVIDIFPAESDLEAIRIELFDDEVENIAAFDPLTGEVFRKLPRFTFY 243

Query: 245 PKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCS 304
           PK+HYVTPRE +++A+E IKEEL  R + L + NKL+E QRL QRT+FDLEM+ ELGYC+
Sbjct: 244 PKSHYVTPRETLLEAVEGIKEELKERLEYLHKANKLVEAQRLEQRTRFDLEMILELGYCN 303

Query: 305 GIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEY 364
           GIENYSR+LSGR  G PPPTL+DYLP D LLV+DESHV++PQ+G MY+GDR+RKETLVEY
Sbjct: 304 GIENYSRYLSGRPAGAPPPTLYDYLPPDALLVIDESHVSVPQVGAMYKGDRSRKETLVEY 363

Query: 365 GFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIE 424
           GFR+PSALDNRP++F+E+E ++PQTI+VSATPG YE E + G VV+QVVRPTGL+DP +E
Sbjct: 364 GFRMPSALDNRPMRFDEWEDVSPQTIFVSATPGPYEAEHA-GRVVEQVVRPTGLVDPQVE 422

Query: 425 VRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVE 484
           VRP  TQVDDLLSEIR+R A  ERVL TTLTKRMAEDL++YL +H  RVRYLHSDIDTVE
Sbjct: 423 VRPALTQVDDLLSEIRKRVAAGERVLATTLTKRMAEDLSDYLADHDVRVRYLHSDIDTVE 482

Query: 485 RMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 544
           R+EIIRDLRLG FDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR
Sbjct: 483 RVEIIRDLRLGTFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 542

Query: 545 NVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIA 604
           N+NG+AILY D +T SM +AI ETERRREKQ  +NE +GI P+G+ K + DI+  G  + 
Sbjct: 543 NLNGRAILYADNVTGSMQRAIDETERRREKQIAFNEANGIVPKGVVKDITDIME-GATVP 601

Query: 605 KTKAKGR-GKSRPIVEPDNVPMDM-SPKALQQKIHELEGLMMQHAQNLEFEEAAQIRDQL 662
             ++K R G ++   E      ++ +P  + ++I +LE  MMQ A++LEFE AAQ+RD++
Sbjct: 602 GARSKKRKGMAKAAEESARYEAELRTPGEITKRIKQLEEKMMQFARDLEFEAAAQLRDEI 661

Query: 663 HQLRELFIAA 672
            QLRE  I++
Sbjct: 662 AQLRERLISS 671