Pairwise Alignments

Query, 673 a.a., UvrABC system protein B from Escherichia coli HS(pFamp)R (ATCC 700891)

Subject, 706 a.a., Excinuclease ABC subunit B from Hydrogenophaga sp. GW460-11-11-14-LB1

 Score =  847 bits (2188), Expect = 0.0
 Identities = 433/665 (65%), Positives = 526/665 (79%), Gaps = 7/665 (1%)

Query: 4   PFKLNSAFKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVL 63
           PF+L   + P+GDQPEAIR+L EG+ DG   QTLLGVTGSGKTFT+ANVIA L RP +V 
Sbjct: 34  PFELFLPYPPAGDQPEAIRQLVEGVNDGEVFQTLLGVTGSGKTFTMANVIARLGRPAIVF 93

Query: 64  APNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMR 123
           APNKTLAAQLY E +EFFP+NAVEYFVSYYDYYQPEAYVP  D FIEKD+++NEHIEQMR
Sbjct: 94  APNKTLAAQLYSEFREFFPKNAVEYFVSYYDYYQPEAYVPQRDLFIEKDSAINEHIEQMR 153

Query: 124 LSATKAMLERRDVVVVASVSAIYGLGDPDLYLKMMLHLTVGMIIDQRAILRRLAELQYAR 183
           LS TK++LERRDVV+VA+VSAIYG+G P+ Y +M++ L  G  I QR ++ +L  +QYAR
Sbjct: 154 LSCTKSILERRDVVIVATVSAIYGIGKPESYHQMVMTLRTGDKIGQRDLIAQLVRMQYAR 213

Query: 184 NDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTI 243
           N+Q F RG FRVRG+ ID+FPAE  ++A+R+ELFD+EVE L LFDPLTG++   IPRFT+
Sbjct: 214 NEQDFSRGKFRVRGDTIDVFPAEHSEMAIRIELFDDEVETLQLFDPLTGKVRQKIPRFTV 273

Query: 244 YPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYC 303
           YP +HYVTPRE+++ A+E IK ELA R K L+   KL+E QRL QRT+FD+EM++E+G+C
Sbjct: 274 YPSSHYVTPREQVLHAVEAIKLELADRLKQLVGEGKLVEAQRLEQRTRFDVEMLSEVGHC 333

Query: 304 SGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVE 363
            GIENYSR L+G  PGEPP TL DYLP D ++ +DESHV + Q GGMY GDRARK TLVE
Sbjct: 334 KGIENYSRHLAGSAPGEPPSTLTDYLPKDAVMFLDESHVLMGQFGGMYNGDRARKTTLVE 393

Query: 364 YGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPII 423
           YGFRLPSALDNRPLK EEFE    Q ++VSATP +YE +   G VV+Q+VRPTGL+DP +
Sbjct: 394 YGFRLPSALDNRPLKLEEFEQRMRQVVFVSATPADYE-KTHAGQVVEQLVRPTGLVDPEL 452

Query: 424 EVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTV 483
           EVRP   QVDD+L EIR R   NERVL+TTLTKRMAE LT+YL E+G +VRYLHSD+DTV
Sbjct: 453 EVRPATHQVDDVLQEIRIRVEKNERVLITTLTKRMAEQLTDYLTENGVKVRYLHSDVDTV 512

Query: 484 ERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAA 543
           ER+EIIRDLRLG FDVLVGINLLREGLD+PEVSLVAILDADKEGFLRSERSLIQTIGRAA
Sbjct: 513 ERVEIIRDLRLGAFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAA 572

Query: 544 RNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNI 603
           RN+ GKAILY D+IT SM +A+ ET+RRR+KQ  +N   GI P+ +NK++ D++     +
Sbjct: 573 RNLGGKAILYADRITDSMKRAMDETQRRRDKQIAHNLAMGIEPRSINKRIKDLI---DGV 629

Query: 604 AKTKAKGRGKSRPIVEPDNVPM--DMSPKALQQKIHELEGLMMQHAQNLEFEEAAQIRDQ 661
              KA GR   R   E        DMS K + ++I  LE LM++HA+NLEFE+AA +RDQ
Sbjct: 630 YSEKA-GREADRLAAESAQRASVEDMSEKDVAREIKRLEKLMLEHARNLEFEKAAGVRDQ 688

Query: 662 LHQLR 666
           L  L+
Sbjct: 689 LAHLK 693