Pairwise Alignments

Query, 720 a.a., Inner membrane protein YccS from Escherichia coli HS(pFamp)R (ATCC 700891)

Subject, 727 a.a., YccS/YhfK family integral membrane protein from Pseudomonas simiae WCS417

 Score =  515 bits (1327), Expect = e-150
 Identities = 289/690 (41%), Positives = 411/690 (59%), Gaps = 18/690 (2%)

Query: 20  YYARIFIALCGTTAFPWWLGDVKLTIPLTLGMVAAALTDLDDRLAGRLRNLIITLFCFFI 79
           Y  R+FIAL G+ A  W+  ++ L IPL LG++A+AL + DD   GRL  L +TL CF I
Sbjct: 21  YSIRVFIALTGSMALCWYQDEMTLLIPLFLGIIASALAETDDSWQGRLNALAVTLVCFSI 80

Query: 80  ASASVELLFPWPWLFAIGLTLSTSGFILLGGLGQRYATIAFGALLIAIYTMLGT-----S 134
           A+ SVELLFP+PW+FAI L L+T    +LG LG+RY  IA   L++++YTM+G      +
Sbjct: 81  AALSVELLFPYPWIFAISLALATFCLTMLGALGERYGAIASATLILSVYTMIGVDQRGGA 140

Query: 135 LYEHWYQQPMYLLAGAVWYNVLTLIGHLLFPVRPLQDNLARCYEQLARYLELKSRMFDPD 194
           + + W++ P+ L+AGA WY  L+++   LF  +P+Q +LAR + +L RYL+LKS +F+P 
Sbjct: 141 VSDFWHE-PLLLVAGAAWYGALSVLWQALFSNQPVQQSLARLFRELGRYLKLKSSLFEPI 199

Query: 195 IEDQSQAPLYDLALANGLLMATLNQTKLSLLTRLRGDRGQRGTRRTLHYYFVAQDIHERA 254
            +   +A   +LA  NG ++A LN  K  +L R+   R      R L  YF+AQDIHERA
Sbjct: 200 RQLDVEARRLELAQQNGRVVAALNAAKEIILHRVGNGRPGSKVSRYLKLYFLAQDIHERA 259

Query: 255 SSSHIQYQTLREHFRHSDVLFRFQRLMSMQGQACQQLSRCILLRQPYQHDPHFERAFTHI 314
           SSSH  Y  L + F HSDVLFR QRL+  QG+ACQ L+  I LRQP+ +D  F  A   +
Sbjct: 260 SSSHYPYNALADAFFHSDVLFRCQRLLRQQGKACQTLAESIQLRQPFIYDDSFAEALGDL 319

Query: 315 DAALERMRDNGAPA--DLLKTLGFLLNNLRAIDAQLATIESEQAQALPHNNDENELADDS 372
           +A+LE +R    PA   LL++L  L  NL  +D  L   ++    +L    D N L D +
Sbjct: 320 NASLEHLRIQSNPAWRGLLRSLRALAANLSTLDRLLG--DASNPDSLADATDSN-LLDRA 376

Query: 373 PHGLSDIWLRLSRHFTPESALFRHAVRMSLVLCFGYAIIQITGMHHGYWILLTSLFVCQP 432
           P  L ++W RL    TP S LFRHA+R+SL L  GY ++       GYWI+LT+LFVCQP
Sbjct: 377 PRNLKEMWTRLRTQMTPTSLLFRHALRLSLALTVGYGMLHAIHASQGYWIILTTLFVCQP 436

Query: 433 NYNATRHRLKLRIIGTLVGIAIGIPVLWFVPSLEGQLVLLVITGVLFFAFRNVQYAHATM 492
           NY ATR +L  RIIGT +G+ +   +    PS   Q +  +  G++FF  R  +Y  AT 
Sbjct: 437 NYGATRRKLGQRIIGTAIGLTVAWALFDLFPSPLVQSMFAIAAGLVFFINRTTRYTLATA 496

Query: 493 FITLLVLLCFNLLGEGFEVALPRVIDTLIGCAIAWAAVSYIWPDWQFRNLPRMLERATEA 552
            ITL+VL CFN +G+G+ + LPR+ DTL+G  IA  AV    PDWQ R L ++L      
Sbjct: 497 AITLMVLFCFNQVGDGYGLFLPRLFDTLLGSLIAGLAVFLFLPDWQGRRLNKVLANTLTC 556

Query: 553 NCRYLDAILEQYHQGRDNRLAYRIARRDAHNRDAELASVVSNMSSEPNVTPQIREAAFRL 612
           N  YL  I++QY  G+ + LAYR+ARR+AHN DA L++ ++NM  EP    +  +  FR 
Sbjct: 557 NSIYLRQIMQQYAAGKSDDLAYRLARRNAHNADAALSTTLANMLMEPGHFRKEADVGFRF 616

Query: 613 LCLNHTFTSYISALGAHREQLTNPEILAFL----DDAVCYVDDALHHQPADEERV---NE 665
           L L+HT  SY+S LGAHRE     E+   L     + +    D +    A+++ +   ++
Sbjct: 617 LVLSHTLLSYLSGLGAHRETQLPAEVREHLIEGAGNTLAASIDEIATGLANKQPIAIQSD 676

Query: 666 ALASLKQRMQQLEPRADSKEPLVVQQVGLL 695
           A  +L   ++Q+    D  + LV  Q+ L+
Sbjct: 677 AEEALAVELEQMPDEIDEGQRLVQTQLALI 706