Pairwise Alignments

Query, 1164 a.a., Transcription-repair-coupling factor from Escherichia coli HS(pFamp)R (ATCC 700891)

Subject, 1149 a.a., transcription-repair coupling factor from Pseudomonas simiae WCS417

 Score = 1251 bits (3238), Expect = 0.0
 Identities = 640/1138 (56%), Positives = 834/1138 (73%), Gaps = 6/1138 (0%)

Query: 25   LPVKAGEQRLLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEISQFT-DQMV 83
            LP  AG+Q   G L GAA +  +AE A       +L+  D Q+A RL  E+S F  D  V
Sbjct: 9    LPAAAGKQHW-GNLPGAALSLAIAEAASAAKRFTLLLTADSQSAERLEQELSFFAPDLPV 67

Query: 84   MNLADWETLPYDSFSPHQDIISSRLSTLYQLPTMQRGVLIVPVNTLMQRVCPHSFLHGHA 143
            ++  DWETLPYD FSPHQDIIS R+++LY+LP +  GVL+VP+ T + R+ P  FL G +
Sbjct: 68   LHFPDWETLPYDLFSPHQDIISQRIASLYRLPELAHGVLVVPITTALHRLAPTKFLLGSS 127

Query: 144  LVMKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSELPYRLDFFDD 203
            LV+  GQ+L  + +RT+L+++GYR VD V EHGE+A RGAL+DLFPMGS+LPYR+D FDD
Sbjct: 128  LVLDIGQKLDVEQMRTRLEASGYRCVDTVYEHGEFAVRGALIDLFPMGSKLPYRIDLFDD 187

Query: 204  EIDSLRVFDVDSQRTLEEVEAINLLPAHEFPTDKAAIELFRSQWRDTFEVKRDPEHIYQQ 263
            EI++LR FD ++QR++++V+++ LLPA EFP  K A+  F++++R+ F+V      I+Q 
Sbjct: 188  EIETLRTFDPENQRSIDKVDSVKLLPAREFPLQKDAVTRFKARFRERFDVDFRRCPIFQD 247

Query: 264  VSKGTLPAGIEYWQPLFFSEPLPPLFSYFPANTLLVNTGDLETSAERFQADTLARFENRG 323
            +S G  PAGIEY+ PLFF E    LF Y P +T + +   +E +AE F  D   R+E R 
Sbjct: 248  LSSGITPAGIEYYLPLFFDET-STLFDYLPQDTQVFSLPGIEQAAENFWNDVRNRYEERR 306

Query: 324  VDPMRPLLPPQSLWLRVDELFSELKNWPRVQLKTEHLPTKAANANLGFQKLPDLAVQAQQ 383
            VDP RPLLPP  L+L V++ F+ LK+WPRV    + + T A         LPDLA+QA+ 
Sbjct: 307  VDPSRPLLPPAELFLPVEDCFARLKSWPRVVASQQDVETGAGRERFPAATLPDLAIQAKA 366

Query: 384  KAPLDALRKFLETFDGPVVFSVESEGRREALGELLARIKIAPQRIMRLDE--ASDRGRYL 441
              PL+AL  FL  F G V+F+ ES GRRE L ELL R+K+ P+ +    +   S     +
Sbjct: 367  TQPLEALSNFLGDFPGRVLFTAESAGRREVLLELLERLKLRPKTVDSWPDFVKSKERLAI 426

Query: 442  MIGAAEHGFVDTVRNLALICESDLLGERVA-RRRQDSRRTINPDTLIRNLAELHIGQPVV 500
             I   + G +     LALI ES L G+RV  RRR++ R   N D +I+NL EL  G PVV
Sbjct: 427  TIAPLDEGLLLDDPALALIAESPLFGQRVMQRRRREKRADANNDAVIKNLTELREGAPVV 486

Query: 501  HLEHGVGRYAGMTTLEAGGITGEYLMLTYANDAKLYVPVSSLHLISRYAGGAEENAPLHK 560
            H++HGVGRY G+ TLE      E+L + YA  AKLYVPV++LHLI+RY G  +  APLH+
Sbjct: 487  HIDHGVGRYLGLQTLEIDNQAAEFLTMEYAEGAKLYVPVANLHLIARYTGSDDALAPLHR 546

Query: 561  LGGDAWSRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDREQYQLFCDSFPFETTPD 620
            LG + W +A++KAAE+VRDVAAELLDIYA+RAA+EG+AF   +  Y  F   F FE TPD
Sbjct: 547  LGSETWQKAKRKAAEQVRDVAAELLDIYARRAAREGYAFADPKADYATFSAGFAFEETPD 606

Query: 621  QAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQ 680
            Q   I AV +DM  P  MDRLVCGDVGFGKTEVAMRAAF+AV   KQVA+LVPTTLLAQQ
Sbjct: 607  QQTTIEAVRADMLAPKPMDRLVCGDVGFGKTEVAMRAAFIAVHGGKQVAILVPTTLLAQQ 666

Query: 681  HYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLG 740
            HY++FRDRFA+WPV +E++SRF+SAKE    +A++AEGKIDI+IGTHKLL  DVK K+LG
Sbjct: 667  HYNSFRDRFADWPVTVEVMSRFKSAKEVNAAIADLAEGKIDIVIGTHKLLSDDVKIKNLG 726

Query: 741  LLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRL 800
            L+I+DEEHRFGVR KE++KA+R+ VDILTLTATPIPRTLNMA+SGMRDLSIIATPPARRL
Sbjct: 727  LVIIDEEHRFGVRQKEQLKALRSEVDILTLTATPIPRTLNMAVSGMRDLSIIATPPARRL 786

Query: 801  AVKTFVREYDSLVVREAILREILRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQ 860
            +V+TFV E +   V+EA+LRE+LRGGQVYYL+NDV+ I+K A  LAELVPEARIAIGHGQ
Sbjct: 787  SVRTFVMEQNKSTVKEALLRELLRGGQVYYLHNDVKTIEKCAADLAELVPEARIAIGHGQ 846

Query: 861  MRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVG 920
            MRERELE+VM+DF+H+RFNVL+ +TIIETGID+P+ANTIIIERAD FGLAQLHQLRGRVG
Sbjct: 847  MRERELEQVMSDFYHKRFNVLIASTIIETGIDVPSANTIIIERADKFGLAQLHQLRGRVG 906

Query: 921  RSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELLGEEQS 980
            RSHHQAYA+LLTP  + +T+DA+KRLEAIA+ +DLGAGF LAT+DLEIRGAGELLG+ QS
Sbjct: 907  RSHHQAYAYLLTPPRQQITSDAEKRLEAIANTQDLGAGFVLATNDLEIRGAGELLGDGQS 966

Query: 981  GSMETIGFSLYMELLENAVDALKAGREPSLEDLTSQQTEVELRMPSLLPDDFIPDVNTRL 1040
            G ++ +GF+LYME+LE AV A++ G +P+L+       E+ LR+P+L+P++++PDV+ RL
Sbjct: 967  GQIQAVGFTLYMEMLERAVKAIRKGEQPNLDQPLGGGPEINLRLPALIPEEYLPDVHARL 1026

Query: 1041 SFYKRIASAKTENELEEIKVELIDRFGLLPDPARTLLDVARLRQQAQKLGIRKLEGNEKG 1100
              YKRIASA  E  L++++VE+IDRFGLLP+P + L+ +  L+ QA++LGI+K++   +G
Sbjct: 1027 ILYKRIASATDEEGLKDLQVEMIDRFGLLPEPTKNLVRLTLLKLQAEQLGIKKVDAGPQG 1086

Query: 1101 GVIEFAEKNHVNPAWLIGLLQKQPQHYRLDGPTRLKFIQDLSERKTRIEWVRQFMREL 1158
            G IEF  +  V+P  LI L+Q QP  Y+ +G T  KF+  +   + R   +      L
Sbjct: 1087 GRIEFEAQTPVDPLVLIKLIQGQPNRYKFEGATLFKFMVPMERAEERFNTLEALFERL 1144