Pairwise Alignments

Query, 1164 a.a., Transcription-repair-coupling factor from Escherichia coli HS(pFamp)R (ATCC 700891)

Subject, 1160 a.a., Transcription-repair coupling factor from Hydrogenophaga sp. GW460-11-11-14-LB1

 Score = 1038 bits (2684), Expect = 0.0
 Identities = 560/1147 (48%), Positives = 752/1147 (65%), Gaps = 23/1147 (2%)

Query: 30   GEQRLLGELTGAACATLVAEIAERHAGP---VVLIAPDMQNALRLHDEISQFTDQMVMNL 86
            G++  +    G+A A ++A++  R         ++  D  +A RL DE++ F   +   L
Sbjct: 9    GKRHTVPHPGGSADALMLAQLGAREKAEGRLTAIVTADANDAQRLIDEMAFFAPGLRCAL 68

Query: 87   -ADWETLPYDSFSPHQDIISSRLSTLYQLPTMQRG----VLIVPVNTLMQRVCPHSFLHG 141
              DWETLPYD+FSPHQD+IS RL+TL+++    +     V+++P  T + R+ P SFL G
Sbjct: 69   FPDWETLPYDTFSPHQDLISERLATLWRISQRDKDTGADVVLIPATTALYRLAPPSFLAG 128

Query: 142  HALVMKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSELPYRLDFF 201
            +    K  Q+L    L+ QL  AGY+HV QV+  GEYA RG L+DLFPMGS +PYR+D F
Sbjct: 129  YTFHFKVKQKLDEARLKGQLTLAGYQHVTQVVSPGEYAVRGGLIDLFPMGSLVPYRVDLF 188

Query: 202  DDEIDSLRVFDVDSQRTLEEVEAINLLPAHEFPTDKAAIELFRSQWRDTFEVKRDPEHIY 261
            DDEIDS+R FD DSQR+L  V  + LLP  EFP D AA   FRS+WR+  E       IY
Sbjct: 189  DDEIDSIRTFDPDSQRSLYPVNEVRLLPGREFPMDDAARAKFRSRWRELLEGDPTKSRIY 248

Query: 262  QQVSKGTLPAGIEYWQPLFFSEPLPPLFSYFPANTLLVNTGDLETSAERFQADTLARFEN 321
            + +  G   AGIEY+ PLFF +    +F Y   +  +V  GDLE + +RF  DT  R   
Sbjct: 249  KDIGNGVATAGIEYYLPLFFDDTAT-VFDYLGTDATVVLHGDLEPAFQRFWQDTKDRHRL 307

Query: 322  RGVDPMRPLLPPQSLWLRVDELFSELKNWPRVQLKTEHLPTKAANANLGFQKLPDLAVQA 381
               D  RP+LPP++L+L  ++ ++      +  ++      +        QKL DL+V  
Sbjct: 308  LRGDAERPVLPPEALFLATEQFYTRANEHAQYVVRPAQ---QDIEHGAHVQKLGDLSVVR 364

Query: 382  QQKAPLDALRKFLETFDGPVVFSVESEGRREALGELLARIKIAPQRIMRLDE--ASDRGR 439
              + PL  L+  +      V+   ES+GRRE+L + L    + P     L E  ASD   
Sbjct: 365  GAEDPLARLQAHIRNTAHRVLLLAESDGRRESLLDFLRASGVHPPAFDSLAEFQASDEKT 424

Query: 440  YLMIGAAEHGFVDTVRNLALICESDLLGER-VARRRQDSRRTINPDTLIRNLAELHIGQP 498
             +   A   GF      +  + E++L       RRR+   +  + D LI++L+EL++G P
Sbjct: 425  GIATAALAVGFSWLDDGIDFVTETELFAAGPTTRRRRKQEQVSDVDALIKDLSELNVGDP 484

Query: 499  VVHLEHGVGRYAGMTTLEAGG-------ITGEYLMLTYANDAKLYVPVSSLHLISRYAGG 551
            VVH  HG+GRY G+  ++ G           E+L L YA+ A LYVPVS L LI RY G 
Sbjct: 485  VVHNAHGIGRYRGLVNMDMGEKNPDGSPALQEFLHLEYADKAVLYVPVSQLQLIGRYTGV 544

Query: 552  AEENAPLHKLGGDAWSRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDREQYQLFCD 611
            + + APLHKLG   W +A++KAAE+VRD AAELL+IYA+RAA++G AF++  + Y++F +
Sbjct: 545  SADEAPLHKLGSGQWDKAKRKAAEQVRDAAAELLNIYARRAARQGHAFRYSAQDYEVFAN 604

Query: 612  SFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVL 671
             F FE T DQ  AI+AV+ DM  P  MDRLVCGDVGFGKTEVA+RAAF+AV   +QVA L
Sbjct: 605  DFGFEETADQRGAIHAVIQDMISPRPMDRLVCGDVGFGKTEVALRAAFVAVTGGRQVAFL 664

Query: 672  VPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQ 731
             PTTLLA+QH+    DRF+ WPV++  +SRFRSAKE T     +A+G +DI++GTHKLL 
Sbjct: 665  APTTLLAEQHFQTLSDRFSKWPVKVAEMSRFRSAKEITAAAKGLADGSVDIVVGTHKLLS 724

Query: 732  SDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSI 791
              VKFKDLGLLI+DEEHRFGVRHKE +KA+RA VD+LTLTATPIPRTL MA+ G+RDLS+
Sbjct: 725  ESVKFKDLGLLIIDEEHRFGVRHKEAMKALRAEVDVLTLTATPIPRTLGMALEGLRDLSV 784

Query: 792  IATPPARRLAVKTFVREYDSLVVREAILREILRGGQVYYLYNDVENIQKAAERLAELVPE 851
            IAT P RRLA+KTFVR   + V+REA+LRE+ RGGQVY+L+N+VE I+   ++L E++PE
Sbjct: 785  IATAPQRRLAIKTFVRNEGNGVIREAVLRELKRGGQVYFLHNEVETIENRRQKLEEILPE 844

Query: 852  ARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQ 911
            ARIAI HGQM ERELERVM DF  QRFNVL+C+TIIETGID+PTANTI++ RAD FGLAQ
Sbjct: 845  ARIAIAHGQMPERELERVMRDFVAQRFNVLLCSTIIETGIDVPTANTIVMSRADKFGLAQ 904

Query: 912  LHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGA 971
            LHQLRGRVGRSHHQAYA+L+ P  + +T  A +RL+AI  +E+LG+GF LA HDLEIRGA
Sbjct: 905  LHQLRGRVGRSHHQAYAYLMVPDIEGLTKHAAQRLDAIQQMEELGSGFYLAMHDLEIRGA 964

Query: 972  GELLGEEQSGSMETIGFSLYMELLENAVDALKAGREPSLEDLTSQQTEVELRMPSLLPDD 1031
            GE+LGE QSG+M  +GF LY E+L  AV +LKAGREP L    S  T++ L  P+LLP+D
Sbjct: 965  GEVLGEHQSGNMLEVGFQLYNEMLSEAVSSLKAGREPDLLSPLSVTTDINLHAPALLPND 1024

Query: 1032 FIPDVNTRLSFYKRIASAKTENELEEIKVELIDRFGLLPDPARTLLDVARLRQQAQKLGI 1091
            +  DV+ RLSFYK++A+AK+ ++++ +  E++DRFG LP  A+TL+DV RLR  +   G+
Sbjct: 1025 YCGDVHLRLSFYKKLATAKSTDQVDALLEEIVDRFGKLPPQAQTLIDVHRLRCISTPYGV 1084

Query: 1092 RKLEGNEKGGVIEFAEKNHVNPAWLIGLLQKQPQHYRLDGPTRLKFIQDLSERKTRIEWV 1151
             K++       I F       P  +I L+QK  +H +L G  +L+  + L E K R++ V
Sbjct: 1085 VKVDAAPGVTNITFRANPPFEPMRIIELIQKN-RHIKLAGNDKLRIERPLPEVKDRVQLV 1143

Query: 1152 RQFMREL 1158
            R  +R L
Sbjct: 1144 RDVLRSL 1150