Pairwise Alignments

Query, 1164 a.a., Transcription-repair-coupling factor from Escherichia coli HS(pFamp)R (ATCC 700891)

Subject, 1116 a.a., transcription-repair coupling factor (mfd) from Echinicola vietnamensis KMM 6221, DSM 17526

 Score =  562 bits (1448), Expect = e-164
 Identities = 318/777 (40%), Positives = 468/777 (60%), Gaps = 32/777 (4%)

Query: 330  LLPPQSLWLRVDELFSELKNWPRVQLKTE-HLPTKAANANLGFQKLPDLAVQAQQKAPLD 388
            +L P++L+       S L    +++   + HLPT          K+ D  ++ Q      
Sbjct: 290  VLQPENLFDDGAAFLSSLDRLTKIEFGNQYHLPTS---------KVFDFDIKPQPS---- 336

Query: 389  ALRKFLETFDGPVVFSVESEGRREALGELLARIKIAPQRIMRLDEASD---RGRYLMIGA 445
                F + FD  V   V++E R+  L  + +  +   +R+  + +  D   + + L +  
Sbjct: 337  ----FNKNFDLLVENLVDNE-RKGLLNIICSESEKQVERLQNIFQELDPTLKIQSLPVSI 391

Query: 446  AEHGFVDTVRNLALICESDLLGERVARRRQDSRRTINPDTLIRNLAELHIGQPVVHLEHG 505
             E GFVD    +A   +  +  ER  R +   + +      ++ L  L  G  VVH+++G
Sbjct: 392  RE-GFVDHSTMIACYTDHQIF-ERYHRYKSHKKASKTKALTLKELKTLQAGDYVVHVDYG 449

Query: 506  VGRYAGMTTLEAGGITGEYLMLTYANDAKLYVPVSSLHLISRYAGGAEENAPLHKLGGDA 565
            VGR+AG+  +E      E + L + +D  LYV + SLH IS+Y+G       + KLG   
Sbjct: 450  VGRFAGLEKVEVNDNFQEAVRLIFRDDDLLYVNIHSLHKISKYSGQEGTLPTMSKLGSPE 509

Query: 566  WSRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDREQYQLFCDSFPFETTPDQAQAI 625
            W   ++K   KV+D+A +L+ +YA+R    G  +  D         SF FE TPDQA A 
Sbjct: 510  WENKKKKVKRKVKDIAKDLIALYAKRRNASGHQYAPDSVLQVELESSFIFEDTPDQAVAT 569

Query: 626  NAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYDNF 685
              V +DM +P  MDRLVCGDVGFGKTEVA+RAAF A+++ KQVAVLVPTT+LA QHY  F
Sbjct: 570  GDVKADMEKPYPMDRLVCGDVGFGKTEVAIRAAFKAINDRKQVAVLVPTTILAMQHYRTF 629

Query: 686  RDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLGLLIVD 745
            ++R   +PV+++ I+RFR+ K+  +I  +V  G+IDIL+GTH+++  DV+FKDLGLLI+D
Sbjct: 630  KERLEGFPVKVDYINRFRTTKQVKEITKQVTSGEIDILVGTHRIVNKDVQFKDLGLLIID 689

Query: 746  EEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTF 805
            EE +FGV+ K+++K +R NVD+LTLTATPIPRTL+ ++ G RDLS+IATPP  R  V T 
Sbjct: 690  EEQKFGVKVKDQLKELRVNVDVLTLTATPIPRTLHFSLMGARDLSVIATPPPNRQPVTTE 749

Query: 806  VREYDSLVVREAILREILRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERE 865
            +  ++  V+R+A+ RE+ RGGQV++++N V  I   A  +  LVP+A+IA  HGQM  ++
Sbjct: 750  IHTFEEEVIRDAVSRELQRGGQVFFVHNRVGEIDSIANLIMRLVPDAKIAGAHGQMDGKQ 809

Query: 866  LERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQ 925
            LE++M  F    F+VLV T IIE+G+DIP ANTIII RA  FGL+ LHQ+RGRVGRS+ +
Sbjct: 810  LEKIMVKFIEGEFDVLVSTNIIESGLDIPNANTIIINRAHMFGLSDLHQMRGRVGRSNKK 869

Query: 926  AYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELLGEEQSGSMET 985
            AY +LLT     +T +A+KRL+ +    DLG GF +A  DL+IRGAG LLG EQSG +  
Sbjct: 870  AYCYLLTSPMSGLTAEARKRLQTLEEFSDLGDGFKVAMRDLDIRGAGNLLGAEQSGFITD 929

Query: 986  IGFSLYMELLENAVDALKAGREPSLED--------LTSQQTEVELRMPSLLPDDFIPDVN 1037
            +GF +Y ++L+ AV  LK     SL +        +  Q   +E  M  L+P+D++ +++
Sbjct: 930  LGFEMYHKILDEAVQELKENEFASLFEVDLKEKVKVLVQDCVIETDMELLIPEDYVSNIS 989

Query: 1038 TRLSFYKRIASAKTENELEEIKVELIDRFGLLPDPARTLLDVARLRQQAQKLGIRKL 1094
             RL+ Y ++ + KTE  L +    + DRFG +P     L++  RLR  A+ LG  KL
Sbjct: 990  ERLNLYSKLDNIKTEEALTKFAHAVSDRFGPIPPVVEDLMETVRLRWLAEGLGFEKL 1046



 Score = 73.6 bits (179), Expect = 9e-17
 Identities = 47/214 (21%), Positives = 96/214 (44%), Gaps = 13/214 (6%)

Query: 24  TLPVKAGEQRLLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEISQFTDQMV 83
           T+    G       ++G+    L+A          ++IA D + A  L  ++S   D++ 
Sbjct: 22  TIQSSVGSNFAFKGISGSMDMVLLATFINLRHSSHLIIAHDKEEAAYLASDLSSLLDRVT 81

Query: 84  MNLADWETLPYDSFSPHQDIISSRLSTLYQLPTMQR--------GVLIVPVNTLMQRVCP 135
            ++      P     P+Q       + L +   + +         +++     L ++V  
Sbjct: 82  PHI-----FPSSYKRPYQHEEVDNANVLMRAEILNKVLSSDTKMEIIVSYPEALYEKVIN 136

Query: 136 HSFLHGHALVMKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSELP 195
              L  +    K G+++  + +   L +  +   D V E G++A RG ++D+F   +E P
Sbjct: 137 KKSLQENTFTAKVGEKVDVEFITELLSTYDFEKTDFVYEPGQFAIRGGIIDVFSFANEYP 196

Query: 196 YRLDFFDDEIDSLRVFDVDSQRTLEEVEAINLLP 229
           YR++ F  EI+S+R FD +SQ + E ++ I+++P
Sbjct: 197 YRIELFGKEIESIRTFDTESQLSEESLDHISIIP 230