Pairwise Alignments

Query, 297 a.a., Hca operon transcriptional activator HcaR from Escherichia coli HS(pFamp)R (ATCC 700891)

Subject, 296 a.a., Transcriptional regulators, LysR family from Hydrogenophaga sp. GW460-11-11-14-LB1

 Score =  187 bits (476), Expect = 2e-52
 Identities = 105/283 (37%), Positives = 158/283 (55%), Gaps = 1/283 (0%)

Query: 3   IELRHLRYFVAVAEELHFGRAAARLNISQPPLSQQIQALEQQIGARLLARTNRSVLLTAA 62
           +E RHLRYF+ +AEELHFGRAA RL I+QPPLS  IQ LE  +GA+L  R +R V LTAA
Sbjct: 1   MEFRHLRYFLVLAEELHFGRAAQRLAITQPPLSLNIQQLEASVGAQLFTRNSRGVQLTAA 60

Query: 63  GKQFLADSRQILSMVDDAAARAERLHQGEAGELRIGFTSSAPFIRAVSDTLSLFRRDYPD 122
           G+ F+  +R +L     AA  A  + QG  G L+IGF  +  + R +   L  F   +P 
Sbjct: 61  GQAFVPAARALLDQAGQAAREAREVAQGLVGSLQIGFAGTVLY-RGLPQILQGFAARHPR 119

Query: 123 VHLQTREMNTREQIAPLIEGTLDMGLLRNTALPESLEHAVIVHEPLMAMIPHDHPLANNP 182
           + L  REM++ +Q+  L+   LD+G +  T +P S    ++  +P +A +P  H LA   
Sbjct: 120 LRLVLREMSSSDQLIDLMHERLDLGFVHTTRVPASFSQILVSSQPFVACLPVGHALARRR 179

Query: 183 NVTLAELAKEPFVFFDPHVGTGLYDDILGLMRRYHLTPVITQEVGEAMTIIGLVSAGLGV 242
            V+L +L  EPF      V    ++ ILGL      +P I  E+   ++++ LVS GLGV
Sbjct: 180 RVSLVKLQGEPFAVVSRAVSPDYHERILGLCADAGFSPEIRYELRHWLSVVSLVSQGLGV 239

Query: 243 SILPASFKRVQLNEMRWVPIAEEDAVSEMWLVWPKHHEQSPAA 285
           +++PA+ ++  L    +VP+  E    +   +W    +Q+  A
Sbjct: 240 ALVPAALQQAGLPGAVFVPLDVETPPYDTHCLWKTDRDQAALA 282