Pairwise Alignments

Query, 341 a.a., HTH-type transcriptional repressor PurR from Escherichia coli HS(pFamp)R (ATCC 700891)

Subject, 340 a.a., DNA-binding transcriptional repressor from Pseudomonas putida KT2440

 Score =  252 bits (643), Expect = 1e-71
 Identities = 152/343 (44%), Positives = 210/343 (61%), Gaps = 6/343 (1%)

Query: 1   MATIKDVAKRANVSTTTVSHVINKTRFVAEETRNAVWAAIKELHYSPSAVARSLKVNHTK 60
           MATIKDVA  A +S TTVSHV+NKTR V+E+ R  V AAI EL Y PSAVARSLK   T 
Sbjct: 1   MATIKDVAALAGISYTTVSHVLNKTRPVSEQVRLKVEAAIIELDYVPSAVARSLKARSTA 60

Query: 61  SIGLLATSSEAAYFAEIIEAVEKNCFQKGYTLILGNAWNNLEKQRAYLSMMAQKRVDGLL 120
           +IGLL  +S   YFAE+   +E  C + GY +IL N+ +N +KQR+YL ++ +KR+DGL+
Sbjct: 61  TIGLLVPNSVNPYFAELARGIEDACERNGYCVILCNSDDNPQKQRSYLRVLLEKRIDGLV 120

Query: 121 VMCSEYPEPLLAMLEEYRHIPMVVMDWGEAKADFTDAVIDNAFEGGYMAGRYLIERGHRE 180
           V      + LL  L   R  PMV++D  E +    D V  +  +G Y+A R+L+E GHR+
Sbjct: 121 VASVGQDDDLLQSLASVR-TPMVIVD-RELEGVDADLVRIDHEQGAYLATRHLLELGHRD 178

Query: 181 IGVIPGPLERNTGAGRLAGFMKAMEEAMIKVPESWIVQGDFEPESGYRAMQQILSQPHRP 240
           +  I GP E      RL+GF +AM EA   VP S ++  DF    G+ A  Q+L +  RP
Sbjct: 179 VAYIGGPAETGVTQLRLSGFRRAMAEAGAPVPGSRVLHCDFTSPGGHAAAAQVL-EGKRP 237

Query: 241 TAVFCGGDIMAMGALCAADEMGLRVPQDVSLIGYDNVRNARYFTPALTTIHQPKDSLGET 300
           +A+F G D++  G L AA E  + VP ++S+IG+D++  +RY  P+LTT+ Q    LGE+
Sbjct: 238 SAIFAGNDMIGFGVLRAAAERNISVPGELSVIGFDDIELSRYVYPSLTTVGQSIRELGES 297

Query: 301 AFNMLLDRIVNKRE-EPQSIEVHPRLIERRSVADGP--FRDYR 340
           A ++LL RI   R+   +   V PR++ R S    P  F DYR
Sbjct: 298 AASLLLTRIATPRQGAAEQRIVAPRIVLRESTGPRPDLFNDYR 340