Pairwise Alignments

Query, 877 a.a., hypothetical protein from Escherichia coli HS(pFamp)R (ATCC 700891)

Subject, 546 a.a., paraquat-inducible, SoxRS-regulated MCE domain protein from Escherichia coli BL21

 Score =  167 bits (424), Expect = 1e-45
 Identities = 95/313 (30%), Positives = 164/313 (52%), Gaps = 11/313 (3%)

Query: 11  EAQIKNKRRISPFWLLPFIALMIAGWLIWDSYQDRGNTVTIDFMSADGIVPGRTPVRYQG 70
           EA+I+  +  SP W+ P +  +I  W+++  Y  +G  VT+   +A+GI  G+T ++ + 
Sbjct: 7   EAKIQKVKNWSPVWIFPIVTALIGAWVLFYHYSHQGPEVTLITANAEGIEGGKTTIKSRS 66

Query: 71  VEVGTVQDISLSDDLRKIEVKVSIKSDMKDALREETQFWLVTPKASLAGVSGLDALVGGN 130
           V+VG V+  +L+DDL  +E+K  + S M+  L ++T FW+V P+    G+SGL  L+ G 
Sbjct: 67  VDVGVVESATLADDLTHVEIKARLNSGMEKLLHKDTVFWVVKPQIGREGISGLGTLLSGV 126

Query: 131 YIGMMPG-KGKEQDHFVALDTQPKYRLDNGDLMIHLQAPDLGSLNSGSLVYFRKIPVGKV 189
           YI + PG KG + D +  LD+ P    D   + + L +   G L+ G  V FR   VG V
Sbjct: 127 YIELQPGAKGSKMDKYDLLDSPPLAPPDAKGIRVILDSKKAGQLSPGDPVLFRGYRVGSV 186

Query: 190 YDYAINPNKQGVVIDVLIERRFTDLVKKGSRFWNVSGVDANVSISGAKVKLESLAALVNG 249
                +  K+ +   + I   +  LV    RFW  SG+  +++ +G +V++ SL  L++G
Sbjct: 187 ETSTFDTQKRNISYQLFINAPYDRLVTNNVRFWKDSGIAVDLTSAGMRVEMGSLTTLLSG 246

Query: 250 AIAFDSPEE---SKPAEAEDTFGLYEDLAHSQRGV------IIKLELPSGAGLTADSTPL 300
            ++FD PE     +P   +  F LY+D    Q  +       +     S  GL     P+
Sbjct: 247 GVSFDVPEGLDLGQPVAPKTAFVLYDDQKSIQDSLYTDHIDYLMFFKDSVRGL-QPGAPV 305

Query: 301 MYQGLEVGQLTKL 313
            ++G+ +G ++K+
Sbjct: 306 EFRGIRLGTVSKV 318



 Score = 99.8 bits (247), Expect = 4e-25
 Identities = 70/225 (31%), Positives = 111/225 (49%), Gaps = 8/225 (3%)

Query: 634 GGQITLHAFDAGKLAVGMP-IRYLGIDIGQIQTLDLITARNEVQAKAVLYPEYVQTFARG 692
           G ++TL   +A  +  G   I+   +D+G +++  L      V+ KA L    ++     
Sbjct: 42  GPEVTLITANAEGIEGGKTTIKSRSVDVGVVESATLADDLTHVEIKARLNSG-MEKLLHK 100

Query: 693 GTRFSVVTPQISAAGVEHLDTILQP-YINVEPG-RGNPRRDFELQEATITDSRYLDGLSI 750
            T F VV PQI   G+  L T+L   YI ++PG +G+    ++L ++         G+ +
Sbjct: 101 DTVFWVVKPQIGREGISGLGTLLSGVYIELQPGAKGSKMDKYDLLDSPPLAPPDAKGIRV 160

Query: 751 IVEAPEAGSLGIGTPVLFRGLEVGTVTGMTLGTLSDRVMIAMRISKRYQHLVRNNSVFWL 810
           I+++ +AG L  G PVLFRG  VG+V   T  T    +   + I+  Y  LV NN  FW 
Sbjct: 161 ILDSKKAGQLSPGDPVLFRGYRVGSVETSTFDTQKRNISYQLFINAPYDRLVTNNVRFWK 220

Query: 811 ASGYSLDFGLTGGVVKTGTFNQFIRGGIAFATPP----GTPLAPK 851
            SG ++D    G  V+ G+    + GG++F  P     G P+APK
Sbjct: 221 DSGIAVDLTSAGMRVEMGSLTTLLSGGVSFDVPEGLDLGQPVAPK 265



 Score = 63.9 bits (154), Expect = 2e-14
 Identities = 71/281 (25%), Positives = 104/281 (37%), Gaps = 22/281 (7%)

Query: 395 LTLTAPESYGIDAGQPLIL-HGVQVGQVIDRKLTSK--GVTFTVAIEPQHRELVKGDSKF 451
           +TL    + GI+ G+  I    V VG V    L      V     +     +L+  D+ F
Sbjct: 45  VTLITANAEGIEGGKTTIKSRSVDVGVVESATLADDLTHVEIKARLNSGMEKLLHKDTVF 104

Query: 452 VVNSRVDVKVGLDGVEFLGASASEWINGGIRILPGDKGEMKASYPLYANLEKALENSLSD 511
            V   V  ++G +G+  LG   S      I + PG KG     Y L  +   A      D
Sbjct: 105 WV---VKPQIGREGISGLGTLLSGVY---IELQPGAKGSKMDKYDLLDSPPLAPP----D 154

Query: 512 LPTTTVSLSAETLPDVQAGSVVLYRKFEVG--EVITVRPRANAFDIDLHIKPEYRNLLTS 569
                V L ++    +  G  VL+R + VG  E  T   +       L I   Y  L+T+
Sbjct: 155 AKGIRVILDSKKAGQLSPGDPVLFRGYRVGSVETSTFDTQKRNISYQLFINAPYDRLVTN 214

Query: 570 NSVFWAEGGAKVQLNGSGLTVQASPLSRALKGAISFDNLSGASASQRKGDKRILYASETA 629
           N  FW + G  V L  +G+ V+   L+  L G +SFD   G    Q    K      +  
Sbjct: 215 NVRFWKDSGIAVDLTSAGMRVEMGSLTTLLSGGVSFDVPEGLDLGQPVAPKTAFVLYDDQ 274

Query: 630 ARAVGGQITLH-------AFDAGKLAVGMPIRYLGIDIGQI 663
                   T H             L  G P+ + GI +G +
Sbjct: 275 KSIQDSLYTDHIDYLMFFKDSVRGLQPGAPVEFRGIRLGTV 315