Pairwise Alignments

Query, 481 a.a., Ribosomal RNA small subunit methyltransferase F from Escherichia coli HS(pFamp)R (ATCC 700891)

Subject, 431 a.a., Ribosomal RNA small subunit methyltransferase B (EC 2.1.1.-) from Hydrogenophaga sp. GW460-11-11-14-LB1

 Score =  100 bits (250), Expect = 7e-26
 Identities = 87/291 (29%), Positives = 127/291 (43%), Gaps = 26/291 (8%)

Query: 32  LAACQRPLRRSIRVNTLKISVADFLQLTAPYGWTLTPIPWCEEGFWIERDNEDALPLGST 91
           L A  +P   ++RVN  ++  A +LQ     G   TP               D L LG+ 
Sbjct: 158 LDANNQPGPMALRVNRRRVDRAAYLQALEAVGLAATPA------------GSDGLVLGAP 205

Query: 92  --AEHLSGLFY----IQEASSMLPVAALFADG--NAPQRVMDVAAAPGSKTTQIAARMNN 143
              E L G       +Q+A++ +    L      +   RV+D  AAPG KT  +  R + 
Sbjct: 206 QPVERLPGFAQGHCSVQDAAAQMAADQLLTGRTWSPSDRVLDACAAPGGKTAHLLERADL 265

Query: 144 EGAILANEFSASRVKVLHANISRCGISNVALTHFDGRVFGVAVPEMFDAILLDAPCSGEG 203
           +  +LA +    R + +   + R G+          R       ++FDAILLDAPC+  G
Sbjct: 266 K--LLALDVDPLRCERISDTLQRLGLQATVRCADAARPAAWWDGQLFDAILLDAPCTASG 323

Query: 204 VVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPGGTLVYSTCTLNREENEAVCMWL 263
           +VR+ PD            + ATQR L+D+ +  L+PGG L+Y+TC++ R E        
Sbjct: 324 IVRRHPDVRWLRRASDVDALVATQRGLLDALWPLLQPGGRLIYATCSVFRAEGAGQVQAF 383

Query: 264 KETYPDAVEFLPLGELFPAANKALTEEGFLHVFPQIYDCEGFFVARLRKTQ 314
              + DAV     G L P +  A     F    P  YD  GFF AR+ K Q
Sbjct: 384 LGRHTDAVHRPSPGHLLPGS--AAPSGEFNDNPPGGYD--GFFYARIDKAQ 430