Pairwise Alignments

Query, 336 a.a., Holliday junction ATP-dependent DNA helicase RuvB from Escherichia coli HS(pFamp)R (ATCC 700891)

Subject, 352 a.a., ATP-dependent DNA helicase RuvB from Pseudomonas simiae WCS417

 Score =  485 bits (1248), Expect = e-142
 Identities = 247/341 (72%), Positives = 288/341 (84%), Gaps = 5/341 (1%)

Query: 1   MIEADRLISA-GTTLPEDVADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLL 59
           MIEADRLI+A G    E+V DRAIRP  L EY+GQP VR QME+FI+AA+ R ++LDH L
Sbjct: 1   MIEADRLIAATGPRDREEVQDRAIRPLSLAEYIGQPTVREQMELFIQAARGRSESLDHTL 60

Query: 60  IFGPPGLGKTTLANIVANEMGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLS 119
           IFGPPGLGKTTLANI+A EMGV++++TSGPVLE+ GDLAA+LTNLEPHDVLFIDEIHRLS
Sbjct: 61  IFGPPGLGKTTLANIIAQEMGVSIKSTSGPVLERPGDLAALLTNLEPHDVLFIDEIHRLS 120

Query: 120 PVVEEVLYPAMEDYQLDIMIGEGPAARSIKIDLPPFTLIGATTRAGSLTSPLRDRFGIVQ 179
           P+VEEVLYPAMED+QLDIMIGEGPAARSIK+DLPPFTL+GATTRAG LT+PLRDRFGIVQ
Sbjct: 121 PIVEEVLYPAMEDFQLDIMIGEGPAARSIKLDLPPFTLVGATTRAGMLTNPLRDRFGIVQ 180

Query: 180 RLEFYQVPDLQYIVSRSARFMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHD 239
           RLEFY   DL  IVSRSA  +GL +  +GA E+ARRARGTPRIANRLLRRVRDFAEV+  
Sbjct: 181 RLEFYSTADLATIVSRSASILGLPLDPEGAFEIARRARGTPRIANRLLRRVRDFAEVRAK 240

Query: 240 GTISADIAAQALDMLNVDAEGFDYMDRKLLLAVIDKFFGGPVGLDNLAAAIGEERETIED 299
           G I+  +A  AL++L+VD  GFD+ DR+LLL +I+KF GGPVG+D+LAAAI EER TIED
Sbjct: 241 GHITKAVADLALNLLDVDEHGFDHQDRRLLLTMIEKFDGGPVGVDSLAAAISEERHTIED 300

Query: 300 VLEPYLIQQGFLQRTPRGRMATTRAWNHFGITPP----EMP 336
           VLEPYLIQQG++ RTPRGR+ T  A+ HFG+  P    EMP
Sbjct: 301 VLEPYLIQQGYIMRTPRGRVVTRHAYLHFGLNIPSRLGEMP 341