Pairwise Alignments

Query, 949 a.a., putative diguanylate cyclase DgcE from Escherichia coli HS(pFamp)R (ATCC 700891)

Subject, 1247 a.a., Sensory box protein from Pseudomonas putida KT2440

 Score =  160 bits (405), Expect = 5e-43
 Identities = 157/564 (27%), Positives = 264/564 (46%), Gaps = 32/564 (5%)

Query: 164 TEGQWLQSNKALCQFLGYSQEELRGLTFQQLT-WPEDLNKDLQQVEKLISGEINTYSMEK 222
           ++G  L+ N+A  + +G   +++ G T   L  W  + +  L  +E+L  G I   ++E 
Sbjct: 456 SDGCLLEVNEAFEEQIGLPPDQVIGRTATDLDLWGVEGSGPLL-LERLHQGGIR--NLEM 512

Query: 223 RYYNRNGDVVWALLAVSLVRHTDGTPLYFIAQIEDINELKRTEQVNQQLMERITLANEAG 282
            +   NG +   L +       DGTP   +A + DI++LK T+Q  Q   E+   A  A 
Sbjct: 513 SFRRSNGQLFTGLTSAETFE-LDGTPALVVA-VRDISQLKETQQQLQTSEEKFAKAFHAS 570

Query: 283 GIGIWEWELKPNIYSWDKRMF---ELYEIPPHIKP---NWQVWYECVLPEDRQHAEKVIR 336
             G+        +       F     Y++ P I     +  +W +  L E ++  +++ R
Sbjct: 571 PDGLLLSRQSDGLLLEVNEGFCRLTGYDLNPTIDQTSLDLGIWVD--LNERKRLVDQLNR 628

Query: 337 DSFQSRSPFKLEFRIAVKDGIRHIRALANRELNKEGEVERLLGINMDMTEVKQLNEALFQ 396
           D F           I   DG   +  L+ R L   G V+ +L I  D+TE       L Q
Sbjct: 629 DGFVR----DFTCHIRRSDGQIRLCELSARPLPITG-VDCMLTIARDITE-----RHLMQ 678

Query: 397 EKERLHITL-DSIGEAVVCIDMAMKITFMNPVAEKMSGWTQEEALG-VPLLTVLHITFGD 454
           EK +L  T+ ++  E V+  D+  +I+ +N    +++G+++ EALG  P L     +   
Sbjct: 679 EKLQLAATVFENTAEGVLITDIDQRISAVNRAFSEITGYSEIEALGQTPRLLA---SGQH 735

Query: 455 NGPLMENIYSADTSRSAIEQDVVLHCRSGGSYDVHYSITPLSTLDGSNIGSVLVIQDVTE 514
           +      ++   T+    + ++    ++G  Y    +I+ +   D      V V  D++ 
Sbjct: 736 DSAFYLAMWHQLTAEGHWQGEIYNKRKNGELYPSWLTISAVRNSDREITHFVAVFADISS 795

Query: 515 SRKMLRQLSYSASHDALTHLANRASFEKQLRILLQTVNSTHQRHALVFIDLDRFKAVNDS 574
            +    +L Y A HD LT L NR  FE +L+ +L     ++++ A++F+DLDRFK +NDS
Sbjct: 796 IKHAQAKLDYQAHHDPLTGLPNRTLFENRLQGVLTCAQVSNRQGAVLFLDLDRFKHINDS 855

Query: 575 AGHAAGDALLRELASLMLSMLRSSDVLARLGGDEFGLLLPDCNVES-ARFIATRIISAVN 633
            GH  GD LL+ +A  +   +R  D +ARLGGDEF +LLP  +  S A  IA ++++  N
Sbjct: 856 LGHPVGDLLLKGIAQRLKEQVRDVDTVARLGGDEFIILLPGLHKPSDASTIANKLLACFN 915

Query: 634 DYHFIWEGRVHRVGASAGITLIDDNNHQAAEVMSQADIACYASQNGGRGRVTVYEPQQAA 693
                 E       AS GI+L   +    + ++  AD A Y S+  GR RV  Y     A
Sbjct: 916 APFQAGEHEFF-TSASIGISLYPQDGTDVSTLIRNADAAMYRSKAKGRNRVEAYTRDLTA 974

Query: 694 AHSERAAMSLDEQWRMIKENQLMM 717
             SER A+   E  R ++ N++ +
Sbjct: 975 QASERIALE-HELRRAVERNEMSL 997



 Score = 34.3 bits (77), Expect = 5e-05
 Identities = 29/129 (22%), Positives = 57/129 (44%), Gaps = 1/129 (0%)

Query: 137 ERKHISESETRFRNAMEYSAIGMALVGTEGQWLQSNKALCQFLGYSQEELRGLTFQQLTW 196
           ER  + E         E +A G+ +   + +    N+A  +  GYS+ E  G T + L  
Sbjct: 673 ERHLMQEKLQLAATVFENTAEGVLITDIDQRISAVNRAFSEITGYSEIEALGQTPRLLAS 732

Query: 197 PEDLNKDLQQVEKLISGEINTYSMEKRYYNRNGDVVWALLAVSLVRHTDGTPLYFIAQIE 256
            +  +     +   ++ E   +  E     +NG++  + L +S VR++D    +F+A   
Sbjct: 733 GQHDSAFYLAMWHQLTAE-GHWQGEIYNKRKNGELYPSWLTISAVRNSDREITHFVAVFA 791

Query: 257 DINELKRTE 265
           DI+ +K  +
Sbjct: 792 DISSIKHAQ 800



 Score = 27.3 bits (59), Expect = 0.006
 Identities = 43/172 (25%), Positives = 68/172 (39%), Gaps = 22/172 (12%)

Query: 112 MPWLPFLLILLPANIMTMVMYA--FRAERKHISE-------------SETRFRNAME-YS 155
           M W   L+  LP  ++ M + A   R  R+  SE             SE  +R  +E  S
Sbjct: 262 MFWSDLLVYGLPTVLLLMAVLAVVIRINRRLSSEISRRIALEQELRSSEYHYRGLVESLS 321

Query: 156 AIGMALVGTEGQWLQSNKALCQFLGYSQEE-LRGLTFQQLTWPED-LNKDLQQVEKLISG 213
           AI       +  +   +      LGY   + LR   ++ +  PED L        +  +G
Sbjct: 322 AIAWEADANDFTYSYVSPHAEDLLGYPLSDWLRPGFWRSILHPEDALWAQAYCDSETAAG 381

Query: 214 EINTYSMEKRYYNRNGDVVWALLAVSLVRHTDGTPLYFIAQIEDINELKRTE 265
               +S++ R    +G  +W    VS++ H  G        + DI+E KRTE
Sbjct: 382 R--DHSLDYRVIRADGQPLWVRNIVSMIEH--GHQPVMRGLMIDISETKRTE 429