Pairwise Alignments

Query, 586 a.a., Putative DNA repair helicase RadD from Escherichia coli HS(pFamp)R (ATCC 700891)

Subject, 787 a.a., Type I restriction enzyme EcoAI R protein from Pseudomonas putida KT2440

 Score = 73.9 bits (180), Expect = 2e-17
 Identities = 104/420 (24%), Positives = 184/420 (43%), Gaps = 85/420 (20%)

Query: 6   RPYQQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIAELA-RLARG----RVLVLAHVKE 60
           R YQ  A++ T+    R +   ++V+ TG GK+    ++  RL +     R+L LA    
Sbjct: 167 RYYQMNAINRTVEAVARGQDRVLLVMATGTGKTYTAFQIIWRLWKSKQKKRILFLADRNI 226

Query: 61  LVAQN-HAKYQALGLEADIFAAGLKRKESHVKVVFGSVQSVA---RNLDAFQ----GEFS 112
           LV Q  +  ++  G      A   ++ ++  ++     Q+V      ++ ++      F 
Sbjct: 227 LVDQTKNNDFKPFGQAMTKIAR--RQIDTSYEIYLSLYQAVTGAEEEMNVYKQFSRDFFD 284

Query: 113 LLIVDECHRIGDDEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIYQFHYHGMVRG 172
           L+++DECHR    E+S +++IL + +        +GLTATP    +  +    Y G    
Sbjct: 285 LIVIDECHRGSAAEDSAWREILGYFSNATH----VGLTATPKETKE--VSSITYFG---- 334

Query: 173 DEKALFRDCIYELPLRYMIKHGYLTPPERLDMPVVQYDFSR-LQA--------QSNG--- 220
                  + +Y   L+  I+ G+L P +     VV+ DF + LQ           NG   
Sbjct: 335 -------EPVYSYTLKQGIEDGFLAPYK-----VVRIDFDKDLQGWRPPKGMLDKNGELI 382

Query: 221 ---LFSEADLNRELKKQQRITPHIISQIMEFAATR---KGVMIFAATVEHAKE----IVG 270
              +++  D++R L  + R T  +  ++ EF       +  ++F   + HA+     +V 
Sbjct: 383 EDRIYNLKDMDRTLVIETR-TQLVAQKVTEFLKASDPFQKTIVFCDDINHAERMRQALVN 441

Query: 271 LLPAEDAA------LITGDTPGAERDVLIENFKAQRFRYLVNVA---VLTTGFDAPHVDL 321
           L P   A        ITGD    + +  ++NF     RY V      ++TTG DA    L
Sbjct: 442 LNPERVAENRKYVMRITGDDQEGKAE--LDNFINPEERYPVIATTSKLMTTGVDAQTCKL 499

Query: 322 IAILRPTESVSLYQQIVGRGLRLAP--GKTDCLILDYA------------GNPHDLYAPE 367
           I + +  +S++ ++QI+GRG R+    GK    I+D+             G+P  +YAPE
Sbjct: 500 IVLDQHIKSMTEFKQIIGRGTRINEDFGKYWFTIMDFKKATELFADPAFDGDPVVVYAPE 559