Pairwise Alignments

Query, 586 a.a., Putative DNA repair helicase RadD from Escherichia coli HS(pFamp)R (ATCC 700891)

Subject, 818 a.a., Type I site-specific restriction-modification system, R (restriction) subunit and related helicases from Echinicola vietnamensis KMM 6221, DSM 17526

 Score = 75.9 bits (185), Expect = 6e-18
 Identities = 105/422 (24%), Positives = 179/422 (42%), Gaps = 86/422 (20%)

Query: 6   RPYQQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIAELARL-----ARGRVLVLAHVKE 60
           R YQQ AV+ T+      +   ++V+ TG GK+    ++        A+ R+L LA    
Sbjct: 169 RYYQQIAVNRTVEAVANGQGRILLVMATGTGKTYTAFQIIHRLWKSRAKKRILFLADRTA 228

Query: 61  LVAQN------HAKYQALGLEADIFAA-------------GLKRKESHVKVVFGSVQSVA 101
           L+ Q       H K +   ++  + +              G+  ++   +V  G  Q + 
Sbjct: 229 LIDQTRRGDFKHFKDKMTIIKKKVVSRADGKEELVSNNKRGIDTEDKAYEVFLGLYQGLT 288

Query: 102 RNLDA------FQGEF-SLLIVDECHRIGDDEESQYQQILTHLTKVNPHLRLLGLTATPF 154
              D       F  EF  L+++DECHR    E+S +++IL +  K       +GLTATP 
Sbjct: 289 NASDIEDAYKDFSPEFFDLIVIDECHRGSAKEDSAWREILRYFNKATH----IGLTATPK 344

Query: 155 RLGKGWIYQFHYHGMVRGDEKALFRDCIYELPLRYMIKHGYLTPPE--RLDMPVVQYDFS 212
              +  +    Y G           D IY   L+  I  G+L P    R+++ V    + 
Sbjct: 345 ETKE--VSNIEYFG-----------DPIYTYSLKQGIDDGFLAPYRVVRVNLNVDAEGWR 391

Query: 213 RLQAQ--------SNGLFSEADLNRELKKQQRITPHIISQIMEFAATRKG------VMIF 258
             Q +         + +++  D ++ L   +R T  +  ++ EF    KG       ++F
Sbjct: 392 PEQGKKDKDGKEVEDRVYNRKDFDKTLVIDER-TQTVARKLTEFL---KGYDRFAKTIVF 447

Query: 259 AATVEHAKEIVGLLPAEDAAL----------ITGDTPGAERDVLIENFKAQRFRYLV--- 305
            + ++HA+ +   L   +A L          ITGD    +R+  ++NF      Y V   
Sbjct: 448 CSDIDHAERMRFALSNLNADLVAKNHKYIMQITGDNDEGKRE--LDNFINPEETYPVIAT 505

Query: 306 NVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLAP--GKTDCLILDYAGNPHDL 363
              ++TTG DA    +I +    +S++ ++QIVGRG R+    GK    ILD+  N  DL
Sbjct: 506 TSELMTTGVDAQTCRVIVLDAEIKSMTKFKQIVGRGTRINEEFGKMFFTILDFR-NVTDL 564

Query: 364 YA 365
           +A
Sbjct: 565 FA 566