Pairwise Alignments

Query, 586 a.a., Putative DNA repair helicase RadD from Escherichia coli HS(pFamp)R (ATCC 700891)

Subject, 1170 a.a., endonuclease R Type I restriction enzyme from Escherichia coli BL21

 Score = 79.0 bits (193), Expect = 1e-18
 Identities = 110/401 (27%), Positives = 176/401 (43%), Gaps = 52/401 (12%)

Query: 5   LRPYQQEAVDATLNHFRRHKTPAVIVLPTGAGKS-LVIAELARLARG----RVLVLAHVK 59
           LR YQ++AV A      + +   ++ + TG GK+   IA + RL +     R+L L   +
Sbjct: 445 LRYYQEDAVRAVEKAIVKGQQEILLAMATGTGKTRTAIAMMFRLIQSQRFKRILFLVDRR 504

Query: 60  ELVAQNHAKYQALGLEADIFAA-----GLKRK--ESHVKVVFGSVQS-VARNLDAFQ--- 108
            L  Q    ++   +  D F +     GL  K  E   K+   +VQS V R L + +   
Sbjct: 505 SLGEQALGAFEDTRINGDTFNSIFDIKGLTDKFPEDSTKIHVATVQSLVKRTLQSDEPMP 564

Query: 109 -GEFSLLIVDECHR--IGDDEESQYQ-QILTHLTKVNPHLRLL--------GLTATP--- 153
              +  ++VDE HR  I D E+++ + Q  + L  V+ + R+L         LTATP   
Sbjct: 565 VARYDCIVVDEAHRGYILDKEQTEGELQFRSQLDYVSAYRRILDHFDAVKIALTATPALH 624

Query: 154 -FRLGKGWIYQFHYHGMVRGDEKALFRDCIYELPLRYMIKHGYLTPPERLDMPVVQYDFS 212
             ++    +Y++ Y   V  D   + +D   ++  R   +  YL+  E+++    Q +  
Sbjct: 625 TVQIFGEPVYRYTYRTAVI-DGFLIDQDPPIQITTRNAQEGVYLSKGEQVERISPQGEVI 683

Query: 213 RLQAQSNGLFSEADLNREL--KKQQRITPHIISQIMEFAATRKGVMIFAATVEHAKEIVG 270
               + +  F  AD NR L      R   + ++  ++   ++K  ++F  T  HA  +V 
Sbjct: 684 NDTLEDDQDFEVADFNRGLVIPAFNRAVCNELTNYLDPTGSQK-TLVFCVTNAHADMVVE 742

Query: 271 LLPA----------EDAAL-ITGDTPGAERDV--LIENFKAQRF-RYLVNVAVLTTGFDA 316
            L             DA + ITGD     R V  +I  F  +R    +V V +LTTG D 
Sbjct: 743 ELRTAFKKKYPQLEHDAIIKITGDADKDARKVQTMITRFNKERLPNIVVTVDLLTTGVDI 802

Query: 317 PHVDLIAILRPTESVSLYQQIVGRGLRLAP--GKTDCLILD 355
           P +  I  LR   S  LY+Q+ GR  RL P   KT   I D
Sbjct: 803 PSICNIVFLRKVRSRILYEQMKGRATRLCPEVNKTSFKIFD 843