Pairwise Alignments

Query, 285 a.a., HTH-type transcriptional activator RhaR from Escherichia coli HS(pFamp)R (ATCC 700891)

Subject, 283 a.a., Transcriptional regulator, AraC family from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

 Score =  157 bits (397), Expect = 3e-43
 Identities = 101/275 (36%), Positives = 149/275 (54%), Gaps = 18/275 (6%)

Query: 16  LFSGLVLNPQLLGRVWFASQPASLPVGSLCIDFPRLDIVLRGEYGNLLEAKQQRLVEGEM 75
           L S L+  P  L +++FAS     P  +  +DFPRL+IVL GE  ++  +    L+  ++
Sbjct: 8   LLSRLINGPLPLRQIYFASASGPAPELAYQVDFPRLEIVLEGELTDM--SITAPLIPCDV 65

Query: 76  LFIPARAANLPVNNKPVMLLSLVFAPTWLGLSF--YDSRTTSLL---HPARQIQLPSLQR 130
           L++PA   N+P    PV  LS++F    LG S   +D +    L   H AR        R
Sbjct: 66  LYVPAGGWNIPQWQTPVTTLSILFGKQQLGFSVVHWDGQQHQNLTKQHVAR--------R 117

Query: 131 GE--GEAMLTALTHLSRSPLEQNIIQPLVLSLLHLCRSVVNMPPGNSQPRGDFLYHSICN 188
           G   G  +L  L  +   P EQ   + +V SLL  CR ++      +  R   L+ +I  
Sbjct: 118 GPRIGSFLLQTLNEMQMQPQEQQTARLIVASLLSHCRDLLGSQIQTAS-RSRALFEAIRE 176

Query: 189 WVQDNYAQPLTRESVAQFFNITPNHLSKLFAQHGTMRFIEYVRWVRMAKARMILQKYHLS 248
           ++ + YA PLTRESVAQ F I+PN+LS LF + G + F EY+   R+  A+ +L+ Y L 
Sbjct: 177 YIDERYAAPLTRESVAQAFYISPNYLSHLFQKTGAIGFNEYLNHTRLEHAKTLLKGYDLK 236

Query: 249 IHEVAQRCGFPDSDYFCRVFRRQFGLTPGEYSARF 283
           + EVA RCGF DS+YFCR+FR+    +P EY  ++
Sbjct: 237 VKEVAHRCGFVDSNYFCRLFRKNTERSPSEYRRQY 271