Pairwise Alignments

Query, 285 a.a., HTH-type transcriptional activator RhaR from Escherichia coli HS(pFamp)R (ATCC 700891)

Subject, 312 a.a., transcriptional activator of rhaSR from Escherichia coli BL21

 Score = 66.6 bits (161), Expect = 6e-16
 Identities = 57/242 (23%), Positives = 109/242 (45%), Gaps = 13/242 (5%)

Query: 47  DFPRLDIVLRGEYGNLLEAKQQRLVEGEMLFIPARAANLPVNNKPVMLLSLVFAPTWLGL 106
           DF  L IV RG   ++L  +  R+  G++ +I A   +   +   ++L ++++ P  L L
Sbjct: 67  DFCELVIVWRGNGLHVLNDRPYRITRGDLFYIHADDKHSYASVNDLVLQNIIYCPERLKL 126

Query: 107 SF-YDSRTTSLLHPARQI--QLPSLQRGEGEAMLTALTHLSR------SPLEQNIIQPLV 157
           +  +          A Q   +L S+   +   ++  L H S       + + + +   LV
Sbjct: 127 NLDWQGAIPGFSASAGQPHWRLGSVGMAQARQIIGQLEHESSQHVPFANEMGELLFGQLV 186

Query: 158 LSLLHLCRSVVNMPPGNSQPRGDFLYHSICNWVQDNYAQPLTRESVAQFFNITPNHLSKL 217
           + L     +  ++PP +S+     L   +   +  +   P   +      + +   L + 
Sbjct: 187 MLLNRHRYTSDSLPPTSSET----LLDKLITRLAASLKSPFALDKFCDEASCSERVLRQQ 242

Query: 218 FAQHGTMRFIEYVRWVRMAKARMILQKYHLSIHEVAQRCGFPDSDYFCRVFRRQFGLTPG 277
           F Q   M   +Y+R VR+  A+ +LQ   L I +++  CGF DS+YF  VF R+ G+TP 
Sbjct: 243 FRQQTGMTINQYLRQVRVCHAQYLLQHSRLLISDISTECGFEDSNYFSVVFTRETGMTPS 302

Query: 278 EY 279
           ++
Sbjct: 303 QW 304