Pairwise Alignments

Query, 608 a.a., RecBCD enzyme subunit RecD from Escherichia coli HS(pFamp)R (ATCC 700891)

Subject, 689 a.a., exodeoxyribonuclease V subunit alpha from Pseudomonas simiae WCS417

 Score =  430 bits (1106), Expect = e-125
 Identities = 295/665 (44%), Positives = 378/665 (56%), Gaps = 79/665 (11%)

Query: 6   QLLEA-VEHKQLRPLD---VQFALTVAGDEHPAVTLAAALLSHDAGEGHVCLPLSRLENN 61
           QLLE  V+   LR LD   V F   +     P V LAAAL SH  G GHVCL L   E  
Sbjct: 22  QLLERWVDRGWLRALDKAFVGFLHELDPQADPLVLLAAALTSHQLGHGHVCLDL--FETL 79

Query: 62  EASHPLLATCVSEIGELQ-----------------NWEECLLASQAVS------RGDEPT 98
           +A  P  A  +   G+LQ                 +W   L AS  V+         +  
Sbjct: 80  KA--PDFALSLPPEGDLQTGAMLLPSQLLDGLDGAHWCHALAASHLVALAVDGRESAQSR 137

Query: 99  PMILCGDRLYLNRMWCNER---TVARFFNEVNHAIEVDEALLAQTLDKLF---PVSDEIN 152
           P++L G RLYL R W  ER   T  R       ++  D   L Q L+ LF   P    I+
Sbjct: 138 PLVLSGKRLYLRRYWTYERRIDTALRLRLATQESVAAD---LPQRLNSLFDQPPPDGVID 194

Query: 153 WQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQMAD--GERCRIRLAAPTGKAAA 210
           WQK+A A+A     S+++GGPGTGKTTTV +LLA L   A   G   RIRLAAPTGKAAA
Sbjct: 195 WQKLACALATRGAFSIVTGGPGTGKTTTVVRLLALLQAPAVEVGSPLRIRLAAPTGKAAA 254

Query: 211 RLTESLGKALRQLPLTDEQKKRIPEDASTLHRLLGAQPGSQRLRHHAGNPLHLDVLVVDE 270
           RLTES+ + +  L + D  K++IP   +T+HRLLG++PG++  RHH GNPL LDVLVVDE
Sbjct: 255 RLTESISQQVLSLKVPDSVKEKIPTQVTTVHRLLGSRPGTRHFRHHIGNPLPLDVLVVDE 314

Query: 271 ASMIDLPMMSRLIDALPDHARVIFLGDRDQLASVEAGAVLGDICAYANAGFTAERARQ-L 329
           ASMIDL MM+ L+DALP HAR++ LGD+DQLASVEAGAVLGD+C  A AGF +   RQ L
Sbjct: 315 ASMIDLEMMANLLDALPPHARLVLLGDKDQLASVEAGAVLGDLCRDAEAGFYSAETRQWL 374

Query: 330 SRLTGTHVPAGTGTE----AASLRDSLCLLQKSYRFGSDSGIGQLAAAINRGDKTAVKTV 385
             ++G  + A    E    +  L   + +L+ S RFG  SGIGQLA  +N+ +    + +
Sbjct: 375 QAVSGEDLSASGLQEDLDGSHPLAQQVVMLRYSRRFGEGSGIGQLARWVNQQNPEEARKL 434

Query: 386 FQQDFTDIEKRLLQSGEDYIAMLE-------EALAGYGRYLDLLQ-ARAEPDL------- 430
           F     D    +   GE   A+         E   GY  YL+LLQ AR  P+        
Sbjct: 435 FAARSHDDLFCVSLKGEHDHALERLVLDGQGEGAEGYRYYLNLLQSARPSPETPRESDAW 494

Query: 431 ------IIQAFNEYQLLCALREGPFGVAGLNERIEQFMQQKRKIHRHPHSRWYEGRPVMI 484
                 ++QAF+ +QLLCA+R+GP+GV GLN RI   +++ R I      +WYEGRPV++
Sbjct: 495 THWAQQLLQAFDAFQLLCAVRKGPWGVEGLNLRITAALRKVRLI--DGDEQWYEGRPVLM 552

Query: 485 ARNDSALGVFNGDIGIAL-----DRG-QGTRVWFAMPD--GNIKSVQPSRLPEHETTWAM 536
            RND  LG+ NGDIGIAL     D G Q  RV F   D  G ++ V PSRL + ET +AM
Sbjct: 553 TRNDYGLGLMNGDIGIALKLPESDGGPQVLRVAFPRNDGQGGVRFVLPSRLNDVETVYAM 612

Query: 537 TVHKSQGSEFDHAALILPSQRTPVVTRELVYTAVTRARRRLSLYADE-RILSAAIATRTE 595
           TVHKSQGSEF H ALILP   +PV+T+EL+YT +TRA+R  SL      +   A+  + +
Sbjct: 613 TVHKSQGSEFTHTALILPDALSPVLTKELIYTGITRAKRWFSLIEPRGGVFEEAVRRKVK 672

Query: 596 RRSGL 600
           R SGL
Sbjct: 673 RLSGL 677