Pairwise Alignments

Query, 608 a.a., RecBCD enzyme subunit RecD from Escherichia coli HS(pFamp)R (ATCC 700891)

Subject, 691 a.a., ATP-dependent DNA helicase and dsDNA/ssDNA exonuclease, ssDNA endonuclease from Pseudomonas putida KT2440

 Score =  438 bits (1127), Expect = e-127
 Identities = 290/660 (43%), Positives = 384/660 (58%), Gaps = 70/660 (10%)

Query: 6   QLLEA-VEHKQLRPLD---VQFALTVAGDEHPAVTLAAALLSHDAGEGHVCLPLSRL--- 58
           QLL+  VE   LR LD   V F    A    P + LAAAL SH  G GHVCL L +    
Sbjct: 32  QLLDRWVERGWLRALDRAFVSFLEERAPGSDPLLLLAAALASHQLGHGHVCLDLQQTLAE 91

Query: 59  ---------ENNEASHPLL--ATCVSEIGELQNWEECLLASQAVSRGDEP----TPMILC 103
                    E +    PLL  +  ++ + +L  W + + AS  V+ GD P     P++  
Sbjct: 92  PDFALSLPPEGDALIGPLLLPSQLLANL-DLNAWLQRISASPLVAAGDTPGQQARPLVRS 150

Query: 104 GDRLYLNRMWCNERTVARFFNEVNHAIEVDEALLAQTLDKLFP---VSDEINWQKVAAAV 160
           G+RLYL R W  ER + +   +     E   A L + L +LF     + +++WQK+A A+
Sbjct: 151 GERLYLRRYWSYERRIDQALRQRLSQAEAPPADLPERLAQLFEGGAPAGQVDWQKLACAL 210

Query: 161 ALTRRISVISGGPGTGKTTTVAKLLAALIQMA--DGERCRIRLAAPTGKAAARLTESLGK 218
           A     S+I+GGPGTGKTTTV +LLA L   A   G   RIRLAAPTGKAAARLTES+G+
Sbjct: 211 ATRAGFSIITGGPGTGKTTTVVRLLALLQAPAVEQGRPLRIRLAAPTGKAAARLTESIGQ 270

Query: 219 ALRQLPLTDEQKKRIPEDASTLHRLLGAQPGSQRLRHHAGNPLHLDVLVVDEASMIDLPM 278
            + +L ++ E + +IP + ST+HRLLG++PGS+  RHHAGNPL LDVLVVDEASMIDL M
Sbjct: 271 QVERLQVSAEVRGQIPTEVSTVHRLLGSRPGSRHFRHHAGNPLPLDVLVVDEASMIDLEM 330

Query: 279 MSRLIDALPDHARVIFLGDRDQLASVEAGAVLGDICAYANAGF-TAERARQLSRLTGTHV 337
           M+ L+DALP  AR++ LGD+DQLASVEAGAVLGD+C  A  GF +   A  L +++G  +
Sbjct: 331 MANLLDALPPRARLVLLGDKDQLASVEAGAVLGDLCRDAEEGFYSPATAAWLQQVSGESL 390

Query: 338 PAGTGTEAAS-----LRDSLCLLQKSYRFGSDSGIGQLAAAINRGDKTAVKTVFQQDFTD 392
            AG+G +A       L   + +L+ S RFG  SGIGQLA  +NR D  A + +      D
Sbjct: 391 -AGSGLKAGDEQRHPLAQQVVMLRFSRRFGEGSGIGQLARLVNRQDAHAARNLLAAPPAD 449

Query: 393 IEKRLLQSGED--YIAMLEEAL-------AGYGRYLDLLQARAEPDL------------- 430
           +    L+  +D  +  +L + L        GY  YL  L  R  P L             
Sbjct: 450 VHSLSLKHEQDRAFDRLLLDGLNRGTDGPQGYRSYLRTL-GRYRPALDTAFDDPAWEQWA 508

Query: 431 --IIQAFNEYQLLCALREGPFGVAGLNERIEQFMQQKRKIHRHPHSRWYEGRPVMIARND 488
             ++++F ++QLLCA+R G +GV GLNER+ + +     I       WYEGRPV++ RND
Sbjct: 509 GKVLRSFEDFQLLCAVRRGAWGVEGLNERVARVLHNAGLI--DSQQPWYEGRPVLVTRND 566

Query: 489 SALGVFNGDIGIAL----DRGQG-TRVWFAMPDGN--IKSVQPSRLPEHETTWAMTVHKS 541
             LG+ NGDIGIAL    + GQ   RV F   DG+  ++ V PSRL E ET +AMTVHKS
Sbjct: 567 YGLGLMNGDIGIALRLPDEHGQPLLRVAFPRNDGSGGVRFVLPSRLNEVETVFAMTVHKS 626

Query: 542 QGSEFDHAALILPSQRTPVVTRELVYTAVTRARRRLSLYADER-ILSAAIATRTERRSGL 600
           QGSEF H AL+LP    PV+T+ELVYT +TRA+   SL    + I   A+A +  R SGL
Sbjct: 627 QGSEFSHTALVLPEALNPVLTKELVYTGITRAKHCFSLVEPRQGIFEEAVARKVRRISGL 686