Pairwise Alignments

Query, 1180 a.a., RecBCD enzyme subunit RecB from Escherichia coli HS(pFamp)R (ATCC 700891)

Subject, 1224 a.a., exodeoxyribonuclease V subunit beta from Pseudomonas simiae WCS417

 Score =  759 bits (1961), Expect = 0.0
 Identities = 505/1221 (41%), Positives = 689/1221 (56%), Gaps = 78/1221 (6%)

Query: 11   LRLPLQGERLIEASAGTGKTFTIAALYLRLLLGLGGS-AAFPRPLTVEELLVVTFTEAAT 69
            L  PL+G +LIEASAGTGKTFTI+ALYLRL+LG GG  ++F R L   ++LVVTFT+AAT
Sbjct: 8    LAFPLKGSQLIEASAGTGKTFTISALYLRLVLGHGGDESSFGRELLPPQILVVTFTDAAT 67

Query: 70   AELRGRIRSNIHELRIACLRETTDNPLYERLLEEIDDKAQAAQW------LLLAERQMDE 123
             ELR RIR  + E      RE  + P  + L+ ++       QW      L +A + MDE
Sbjct: 68   KELRERIRIRLAEAA-RFFREEIEQP--DALIADLRADYLPEQWPACANRLDIAAQWMDE 124

Query: 124  AAVFTIHGFCQRMLNLNAFESGMLFEQQLIEDESLLRYQACADFWRRHCYPLPREIAQVV 183
            AAV TIH +CQRML  +AF+SG LF Q L  D S L  +   D+WR  CYP+  +    V
Sbjct: 125  AAVSTIHSWCQRMLREHAFDSGSLFTQTLETDHSDLLGEVLRDYWRLFCYPMHDDALNWV 184

Query: 184  FETWKGPQALLRDINRYLQGEAPVIKAPPPDDETLASRHAQIVARIDTVKQQWRDAVGEL 243
               W GP AL+  +      E P  +   P +   A    +  A + T+K  W+    EL
Sbjct: 185  RSHWGGPAALMPRVRALFGSERPTDETREPAELITACLQERREA-LTTLKAPWQQWATEL 243

Query: 244  DAL----IESSGIDRRKFNRSNQAKWIDKISAWAEEET-NSYQLPESLEKFSQRFLEDRT 298
              +    + +  +D RK        W +KISAWA +ET     +     + +   + +  
Sbjct: 244  RDICLQAVAAKAVDGRKMQARYFEPWFEKISAWAADETLEQLDIGTGFTRLTPDGMAEAW 303

Query: 299  KAGGETPRHPLFEAIDQLLA--EPLSIRDL-VITRALAEIRETVAREKRRRGELGFDDML 355
            K  GE P+HP  +A+  L A  + L   D  V+  A   + +    EKRRR E+GFDDML
Sbjct: 304  K--GEPPQHPGIDAMAGLKAALDALPTPDAAVLQHAAGWVGKRFEEEKRRRAEMGFDDML 361

Query: 356  SRLDSALRSESGEVLAAAIRTRFPVAMIDEFQDTDPQQYRIFR---RIWHHQPETALLLI 412
             RL++AL+++ GE LA+ +R +FPVA+IDEFQDTDP QY IF    RI  +  ++ L LI
Sbjct: 362  IRLNAALQADGGERLASVVREQFPVALIDEFQDTDPVQYSIFDSIYRIEENHLDSGLFLI 421

Query: 413  GDPKQAIYAFRGADIFTYMKAR-SEVHAHYTLDTNWRSAPGMVNSVNKLFSQTDD---AF 468
            GDPKQAIYAFRGADI+TY++AR S    H+TL TN+RS+  MV +VN +F + +    AF
Sbjct: 422  GDPKQAIYAFRGADIYTYLRARQSTTGRHHTLGTNFRSSHAMVEAVNHVFQRAETGRGAF 481

Query: 469  MFRE------IPFIPVKSAGKNQALRFVFKGETQPAMKMW-LMEGESCGVGDYQSTMAQV 521
            +FRE      +PF  V S G+ + L+    G+T PAM +W L   +      Y+  +A  
Sbjct: 482  LFREPDGVNPVPFHSVLSQGRKEQLQV--DGQTLPAMNLWHLPTDQPVSNVIYRQQLAAA 539

Query: 522  CAAQIRDWLQAGQRGEALLMNGDDA-RPVRASDISVLVRSRQEAAQVRDALTLLEIPSVY 580
            CA  I + L  GQ+G A  +  D + + VR SDI++LVR  +EA  VR  L    + SVY
Sbjct: 540  CATHIVELLNGGQQGSAGFLQPDGSFKGVRPSDIAILVRDGKEAQAVRGELAARGVRSVY 599

Query: 581  LSNRDSVFETLEAQEMLWLLQAVMTPERENTLRSALATSMMGLNALDIETLNNDEHAWDV 640
            LS++DSVF   EA ++L  L+A   P+ E  LR+ALA   + L+  ++E LN DE AW+ 
Sbjct: 600  LSDKDSVFAAQEAHDLLAWLKACAEPDVERPLRAALACVTLNLSLAELERLNQDELAWES 659

Query: 641  VVEEFDGYRQIWRKRGVMPMLRALMSARNIAENLLATAGGERRLTDILHISELLQEAGTQ 700
             V +F GYR IWR +GV+PMLR L+    + + L+A + GER LT++LH+SELLQ+A ++
Sbjct: 660  RVMQFRGYRTIWRTQGVLPMLRRLLHDFKLPQTLIARSDGERVLTNLLHLSELLQQAASE 719

Query: 701  LESEHALVRWLSQHILEPDSNASSQQMRLESDKHLVQIVTIHKSKGLEYPLVWLPFITNF 760
            L+ E AL+R L++H+         Q +RLESD+ LV++VTIHKSKGLEY LV+LPFI + 
Sbjct: 720  LDGEQALIRHLAEHLALSGQAGEEQILRLESDEQLVKVVTIHKSKGLEYDLVFLPFICSA 779

Query: 761  RVQEQA----FYHDRHSFEAVLDLNAAPESVDLAEAERLAEDLRLLYVALTRSVWHCSLG 816
            +  + +     YHD +  ++ + L   PE +  A+ ERLAEDLRL YVALTR+   C LG
Sbjct: 780  KPVDGSRLPLHYHDENG-KSHVSLRPTPELIAQADNERLAEDLRLFYVALTRAKHACWLG 838

Query: 817  VAPLVRRRGDKKGDTDVHQSALGRLLQKGEP-QDAAGLRTCIEALCDDDIAWQTAQTGDN 875
            +A L  +RG+      +H SALG LL  G    ++AGL   +  L +   A    Q  + 
Sbjct: 839  IADL--KRGNSNNSV-LHLSALGYLLGAGASLGESAGLARWLLDLQEGCTAIHYGQVPEA 895

Query: 876  QPWQVNDV-STAELNAKTL-QRLPGDNWRVTSYSGLQQRGHGIAQDLM------------ 921
            Q    +   + A L A  L +R   +NW + SYS L+      A  L             
Sbjct: 896  QDNLFHPPRNEATLRAPLLPKRKAAENWWIASYSALRIGDSMSAATLEAPESPQAQKLFD 955

Query: 922  -PRLDVDAAGVASVVEEPTLTPHQFPRGASPGTFLHSLFE-----DLDFTQPVDPNWVRE 975
              RLD DA    +         H+FPRG +PGTFLH L E       + T       V  
Sbjct: 956  DERLDPDAPREVAASGGDI---HRFPRGPNPGTFLHGLLEWAGEDGFNVTPEAIEKAVGA 1012

Query: 976  KLELGGFESQWEPVLTEWITAVLQAPL--NETGVSLSQLSARNKQVEMEFYLPISEPLIA 1033
            +     +E  W   L+ W+  +LQ PL  N + VSLS L  +  Q+EMEF+   S  +  
Sbjct: 1013 RCNRRNWEG-WIITLSSWLGHLLQTPLPVNNSHVSLSGL--QQYQIEMEFWF-ASHKVDV 1068

Query: 1034 SQLDTLIRQFDPLSAGCPPLEFMQVRGMLKGFIDLVFRHEGRYYLLDYKSNWLGEDSSAY 1093
              LD L+ Q+          E + + GM KGFIDL F H+GRYY+ DYKSNWLG D SAY
Sbjct: 1069 LALDKLVCQYTHNGVSRVAAEPVLLNGMFKGFIDLTFEHDGRYYVADYKSNWLGPDDSAY 1128

Query: 1094 TQQAMAAAMQAHRYDLQYQLYTLALHRYLRHRIADYDYEHHFGGVIYLFLRGVDKEHPQQ 1153
            T  AM  ++  HRYDLQY LY LALHR L+ R+ DYDY+ H GG +Y+FLRG   +   Q
Sbjct: 1129 TFDAMEQSILDHRYDLQYVLYLLALHRQLKARLPDYDYDRHVGGALYIFLRGT--QSASQ 1186

Query: 1154 GIYTTRPNAGLIALMDEMFAG 1174
            G Y TRP   LI  +D +F G
Sbjct: 1187 GAYFTRPPRELIEGLDLLFQG 1207