Pairwise Alignments

Query, 1180 a.a., RecBCD enzyme subunit RecB from Escherichia coli HS(pFamp)R (ATCC 700891)

Subject, 1224 a.a., Chi activated ATP-dependent DNA helicase and dsDNA/ssDNA exonuclease from Pseudomonas putida KT2440

 Score =  750 bits (1936), Expect = 0.0
 Identities = 496/1219 (40%), Positives = 678/1219 (55%), Gaps = 73/1219 (5%)

Query: 11   LRLPLQGERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATA 70
            L  PL G +LIEASAGTGKTFTI+ALYLRL+LG GG   F R L   ++LVVTFT+AAT 
Sbjct: 9    LSFPLHGSQLIEASAGTGKTFTISALYLRLILGHGGEQGFERELLPPQILVVTFTDAATK 68

Query: 71   ELRGRIRSNIHELRIACLRETTD-NPLYERLLEEIDDK--AQAAQWLLLAERQMDEAAVF 127
            ELR RIR+ + E       E    +PL  +L ++   +   + A  L +A + MDEAAV 
Sbjct: 69   ELRERIRARLAEAARFFRGELEGADPLLHQLRDDYPQENWPRCAGRLEIAVQWMDEAAVS 128

Query: 128  TIHGFCQRMLNLNAFESGMLFEQQLIEDESLLRYQACADFWRRHCYPLPREIAQVVFETW 187
            TIHG+CQRML  +AF+SG LF Q L  D S L  Q   D+WRR CY +  +    V   W
Sbjct: 129  TIHGWCQRMLREHAFDSGSLFTQTLETDHSELLGQVMRDYWRRFCYGMQGDALAWVRGNW 188

Query: 188  KGPQALLRDINRYLQGEAPVIKAPPPD---DETLASRHAQIVARIDTVKQQWRDAVGEL- 243
              P ALL  I             P P      +L  R AQ+ ARI     QW + + ++ 
Sbjct: 189  GSPDALLPRIRPLFGRVRAQQNGPEPAALIQASLQQRGAQL-ARIKAPWAQWAEELRQIC 247

Query: 244  -DALIESSGIDRRKFNRSNQAKWIDKISAWA-EEETNSYQLPESLEKFSQRFLEDRTKAG 301
             DAL     +D RK        W DK+ AWA +E+     L     + +   + +  K  
Sbjct: 248  RDALAAKQ-VDGRKMQARYFEPWFDKLCAWASDEQLVELDLGTGFTRLTPAGMAEAWK-- 304

Query: 302  GETPRHPLFEAIDQLLAEPLSIRDL----VITRALAEIRETVAREKRRRGELGFDDMLSR 357
            GE P HP   A+ Q L + L   D     ++  A + +      EKRRR E+GFDDML R
Sbjct: 305  GEPPEHPALNAM-QHLQQQLQALDSPDAPLLEHAASWVSARFEVEKRRRAEMGFDDMLVR 363

Query: 358  LDSALRSESGEVLAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIWH---HQPETALLLIGD 414
            L  AL SE+GE LA+ IR +FPVA+IDEFQDTDP QY IF RI+    ++ ET L +IGD
Sbjct: 364  LQHALASEAGERLASLIREQFPVALIDEFQDTDPVQYGIFERIYQISENRAETGLFMIGD 423

Query: 415  PKQAIYAFRGADIFTYMKARSEVHAH-YTLDTNWRSAPGMVNSVNKLFSQTD------DA 467
            PKQAIYAFRGADI+TY+ AR       ++LDTN+RS+  MV +VN++F Q +       A
Sbjct: 424  PKQAIYAFRGADIYTYLAARRATSGRLHSLDTNYRSSKAMVAAVNQVFLQAEAREAGRGA 483

Query: 468  FMFRE-----IPFIPVKSAGKNQALRFVFKGETQPAMKMWLMEGES-CGVGDYQSTMAQV 521
            F+FRE     +PFI V++ G+ + L  +  GE   A++ W +E E       Y+  MA  
Sbjct: 484  FLFREADDNPLPFIEVRAKGRGEQL--LIDGEVSAALQCWQLESEEPVSSSVYRQQMAAS 541

Query: 522  CAAQIRDWLQAGQRGEALLMNGD-DARPVRASDISVLVRSRQEAAQVRDALTLLEIPSVY 580
            CA+ I   L  GQ+G +   N + + R    SDI++LVR   EA  VR  L   E+ SVY
Sbjct: 542  CASHIVALLNGGQQGTSGFRNAEGELRACLPSDIAILVRDGHEAQMVRAELAAREVRSVY 601

Query: 581  LSNRDSVFETLEAQEMLWLLQAVMTPERENTLRSALATSMMGLNALDIETLNNDEHAWDV 640
            LS++DSVF   EA ++L  L+A   P+ E  L++ALA+  +GL+   ++ LN DE  W+ 
Sbjct: 602  LSDKDSVFAAQEAHDLLAWLKACAEPDSERLLKAALASLTLGLSLAALDRLNQDERVWES 661

Query: 641  VVEEFDGYRQIWRKRGVMPMLRALMSARNIAENLLATAGGERRLTDILHISELLQEAGTQ 700
             V  F  YR  W+++GV+PMLR L+    +   L+  + GER LT++LH++ELLQ+A  +
Sbjct: 662  WVMRFRLYRDTWQRQGVLPMLRHLLHDFQLPRTLIRRSDGERVLTNLLHLAELLQQAAGE 721

Query: 701  LESEHALVRWLSQHILEPDSNASSQQMRLESDKHLVQIVTIHKSKGLEYPLVWLPFITNF 760
            L+ E AL+R L++H+         Q +RLESD+ LV++VTIHKSKGLEYPLV+LPFI   
Sbjct: 722  LDGEQALIRHLAEHLASSGQAGEEQILRLESDEQLVKVVTIHKSKGLEYPLVYLPFICTS 781

Query: 761  RVQEQA----FYHDRHSFEAVLDLNAAPESVDLAEAERLAEDLRLLYVALTRSVWHCSLG 816
            +  + +     +HD     A L L    E ++ A+ ERLAEDLRLLYVALTR+   C LG
Sbjct: 782  KPVDGSRLPLAWHDSEG-NAHLTLTPDQEQIERADDERLAEDLRLLYVALTRAQHACWLG 840

Query: 817  VAPLVRRRGDKKGDTDVHQSALGRLLQKG-EPQDAAGLRTCIEALCDD--DIAWQTAQTG 873
            VA L  +RG+ K  + +H+SA G LL  G     +A L   ++AL      I        
Sbjct: 841  VADL--KRGNLK-SSQLHRSAFGYLLGGGLALAGSAQLTDWLQALAASCPHITCPGLPQA 897

Query: 874  DNQPWQVNDVSTAELNAKTLQRLPGDNWRVTSYSGLQQRGHGI------AQDLMPRLDVD 927
            D Q +++       L A+  +    ++W + SYS L+     +      AQ L+   +V 
Sbjct: 898  DEQMYRMPHAERELLPARRPRHAAAEHWWIASYSALRVGDQTLGADSSQAQQLLDD-EVP 956

Query: 928  AAGVASVVEEPTLTPHQFPRGASPGTFLHSL--------FEDLDFTQPVDPNWVREKLEL 979
             A V   V   +   H+FPRG +PGTFLH L        F ++     +    V ++   
Sbjct: 957  DAQVLREVPADSGDIHRFPRGPNPGTFLHGLLEWAGREGFSEVSANPQLIERTVGQRCNR 1016

Query: 980  GGFESQWEPVLTEW----ITAVLQAPLNETGVSLSQLSARNKQVEMEFYLPISEPLIASQ 1035
              + + W P L+ W    ++  L  P ++  V+L QL  R+ Q+EMEF+   S  + A Q
Sbjct: 1017 RDW-AGWIPTLSHWMQRLLSEALPLPGSDQSVTLGQL--RHYQIEMEFWF-ASHRVDAEQ 1072

Query: 1036 LDTLIRQFDPLSAGCPPLEFMQVRGMLKGFIDLVFRHEGRYYLLDYKSNWLGEDSSAYTQ 1095
            LD L+ +        P  +   + GM KGFIDL F  +GRYY+ DYKSNWLG D  AY  
Sbjct: 1073 LDRLVARHTHPGLARPAAQPTVLNGMFKGFIDLAFELDGRYYVTDYKSNWLGADIQAYDA 1132

Query: 1096 QAMAAAMQAHRYDLQYQLYTLALHRYLRHRIADYDYEHHFGGVIYLFLRGVDKEHPQQGI 1155
             AM  A+  HRYDLQY LY LALHR LR R+ADYDY+ H GG +++FLRG        G+
Sbjct: 1133 MAMEKAILEHRYDLQYVLYLLALHRQLRARLADYDYDRHVGGALFIFLRGASSS--GHGV 1190

Query: 1156 YTTRPNAGLIALMDEMFAG 1174
            Y  +P   LI  +D +F G
Sbjct: 1191 YHAKPPRELIESLDALFRG 1209